Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH3P22223 AC093525.9-201ENST00000624961 1746 ntBASIC16.45■□□□□ 0.22
CDH3P22223 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH3P22223 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH3P22223 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CDH3P22223 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CDH3P22223 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 AC002310.6-201ENST00000624451 1377 ntBASIC16.44■□□□□ 0.22
CDH3P22223 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CDH3P22223 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 YBX2P1-201ENST00000394192 760 ntBASIC16.44■□□□□ 0.22
CDH3P22223 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.44■□□□□ 0.22
CDH3P22223 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CDH3P22223 IGLL3P-201ENST00000412472 434 ntBASIC16.44■□□□□ 0.22
CDH3P22223 DNAJB3-201ENST00000446806 729 ntBASIC16.44■□□□□ 0.22
CDH3P22223 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH3P22223 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH3P22223 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.44■□□□□ 0.22
CDH3P22223 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH3P22223 AC010507.1-201ENST00000633895 436 ntBASIC16.44■□□□□ 0.22
CDH3P22223 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CDH3P22223 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH3P22223 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CDH3P22223 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH3P22223 TSPY26P-202ENST00000565928 3884 ntBASIC16.44■□□□□ 0.22
CDH3P22223 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH3P22223 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH3P22223 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH3P22223 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH3P22223 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.43■□□□□ 0.22
CDH3P22223 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CDH3P22223 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CDH3P22223 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH3P22223 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH3P22223 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.43■□□□□ 0.22
CDH3P22223 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.43■□□□□ 0.22
CDH3P22223 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH3P22223 AC004832.2-201ENST00000426397 482 ntBASIC16.43■□□□□ 0.22
CDH3P22223 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.43■□□□□ 0.22
CDH3P22223 CXCL1P1-201ENST00000502804 216 ntBASIC16.43■□□□□ 0.22
CDH3P22223 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH3P22223 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.43■□□□□ 0.22
CDH3P22223 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.43■□□□□ 0.22
CDH3P22223 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.43■□□□□ 0.22
CDH3P22223 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CDH3P22223 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.43■□□□□ 0.22
CDH3P22223 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.43■□□□□ 0.22
CDH3P22223 AC096734.2-201ENST00000562054 433 ntBASIC16.43■□□□□ 0.22
CDH3P22223 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.43■□□□□ 0.22
CDH3P22223 MIR3687-2-201ENST00000577708 61 ntBASIC16.43■□□□□ 0.22
CDH3P22223 AC010327.4-202ENST00000591484 748 ntBASIC16.43■□□□□ 0.22
CDH3P22223 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.43■□□□□ 0.22
CDH3P22223 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.43■□□□□ 0.22
CDH3P22223 MIR3687-1-201ENST00000614492 61 ntBASIC16.43■□□□□ 0.22
CDH3P22223 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.43■□□□□ 0.22
CDH3P22223 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.43■□□□□ 0.22
CDH3P22223 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.43■□□□□ 0.22
CDH3P22223 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH3P22223 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH3P22223 BCAR1-209ENST00000546196 1340 ntBASIC16.43■□□□□ 0.22
CDH3P22223 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms