Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AL020989.1-201ENST00000422979 469 ntBASIC16.44■□□□□ 0.22
VPS4BO75351 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.44■□□□□ 0.22
VPS4BO75351 HNRNPDP1-201ENST00000439535 754 ntBASIC16.44■□□□□ 0.22
VPS4BO75351 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS4BO75351 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 AC004967.1-201ENST00000453589 447 ntBASIC16.44■□□□□ 0.22
VPS4BO75351 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.44■□□□□ 0.22
VPS4BO75351 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.44■□□□□ 0.22
VPS4BO75351 AC040169.1-201ENST00000565382 521 ntBASIC16.44■□□□□ 0.22
VPS4BO75351 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS4BO75351 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.44■□□□□ 0.22
VPS4BO75351 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.44■□□□□ 0.22
VPS4BO75351 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
VPS4BO75351 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VPS4BO75351 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VPS4BO75351 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS4BO75351 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
VPS4BO75351 PMPCAP1-201ENST00000508114 1576 ntBASIC16.43■□□□□ 0.22
VPS4BO75351 AC006538.1-201ENST00000567905 1585 ntBASIC16.43■□□□□ 0.22
VPS4BO75351 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VPS4BO75351 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 RCN1P2-201ENST00000398357 915 ntBASIC16.43■□□□□ 0.22
VPS4BO75351 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 KRT18P3-201ENST00000451602 1288 ntBASIC16.43■□□□□ 0.22
VPS4BO75351 CD63-204ENST00000546939 779 ntTSL 3 BASIC16.43■□□□□ 0.22
VPS4BO75351 DUX4L17-201ENST00000557360 1267 ntBASIC16.43■□□□□ 0.22
VPS4BO75351 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
VPS4BO75351 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS4BO75351 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS4BO75351 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS4BO75351 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.43■□□□□ 0.22
VPS4BO75351 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS4BO75351 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
VPS4BO75351 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS4BO75351 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS4BO75351 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS4BO75351 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VPS4BO75351 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
VPS4BO75351 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
VPS4BO75351 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS4BO75351 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
VPS4BO75351 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VPS4BO75351 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS4BO75351 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
VPS4BO75351 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS4BO75351 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VPS4BO75351 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS4BO75351 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS4BO75351 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS4BO75351 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.42■□□□□ 0.22
VPS4BO75351 AC092910.1-201ENST00000482027 1129 ntBASIC16.42■□□□□ 0.22
VPS4BO75351 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 IGHV3-22-201ENST00000520721 359 ntBASIC16.42■□□□□ 0.22
VPS4BO75351 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS4BO75351 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS4BO75351 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS4BO75351 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS4BO75351 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS4BO75351 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS4BO75351 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
VPS4BO75351 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
VPS4BO75351 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS4BO75351 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.42■□□□□ 0.22
VPS4BO75351 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms