Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN3O15551 AL161645.1-201ENST00000622716 1255 ntBASIC18.25■□□□□ 0.51
CLDN3O15551 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN3O15551 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN3O15551 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.25■□□□□ 0.51
CLDN3O15551 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN3O15551 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN3O15551 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN3O15551 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CLDN3O15551 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN3O15551 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLDN3O15551 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CLDN3O15551 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CLDN3O15551 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN3O15551 KRT8P39-201ENST00000396270 1433 ntBASIC18.24■□□□□ 0.51
CLDN3O15551 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CLDN3O15551 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN3O15551 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN3O15551 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.24■□□□□ 0.51
CLDN3O15551 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
CLDN3O15551 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN3O15551 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN3O15551 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN3O15551 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.24■□□□□ 0.51
CLDN3O15551 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.24■□□□□ 0.51
CLDN3O15551 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.24■□□□□ 0.51
CLDN3O15551 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CLDN3O15551 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.24■□□□□ 0.51
CLDN3O15551 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CLDN3O15551 AC099522.2-201ENST00000607001 744 ntBASIC18.24■□□□□ 0.51
CLDN3O15551 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
CLDN3O15551 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CLDN3O15551 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN3O15551 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN3O15551 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CLDN3O15551 SNX33P1-201ENST00000592116 1762 ntBASIC18.24■□□□□ 0.51
CLDN3O15551 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.24■□□□□ 0.51
CLDN3O15551 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLDN3O15551 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.23■□□□□ 0.51
CLDN3O15551 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.23■□□□□ 0.51
CLDN3O15551 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.23■□□□□ 0.51
CLDN3O15551 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CLDN3O15551 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CLDN3O15551 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.23■□□□□ 0.51
CLDN3O15551 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.23■□□□□ 0.51
CLDN3O15551 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.23■□□□□ 0.51
CLDN3O15551 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.23■□□□□ 0.51
CLDN3O15551 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CLDN3O15551 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
CLDN3O15551 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.23■□□□□ 0.51
CLDN3O15551 AC004967.1-201ENST00000453589 447 ntBASIC18.23■□□□□ 0.51
CLDN3O15551 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.23■□□□□ 0.51
CLDN3O15551 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.23■□□□□ 0.51
CLDN3O15551 AC021097.1-201ENST00000607902 574 ntBASIC18.23■□□□□ 0.51
CLDN3O15551 AC134684.3-201ENST00000641758 218 ntBASIC18.23■□□□□ 0.51
CLDN3O15551 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CLDN3O15551 RNF216P1-203ENST00000404404 2427 ntBASIC18.23■□□□□ 0.51
CLDN3O15551 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CLDN3O15551 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.23■□□□□ 0.51
CLDN3O15551 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CLDN3O15551 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CLDN3O15551 AL603756.1-201ENST00000606511 2163 ntBASIC18.23■□□□□ 0.51
CLDN3O15551 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLDN3O15551 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CLDN3O15551 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
CLDN3O15551 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CLDN3O15551 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CLDN3O15551 AL671277.1-201ENST00000429656 993 ntBASIC18.22■□□□□ 0.51
CLDN3O15551 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms