Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
AP4E1Q9UPM8 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 ALOX12P2-203ENST00000570921 1945 ntBASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 AL031731.1-201ENST00000642131 2094 ntBASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 PCDHB19P-201ENST00000570871 2371 ntBASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
AP4E1Q9UPM8 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 ZNF259P1-201ENST00000407656 1365 ntBASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 RHOQP3-201ENST00000437982 621 ntBASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 GGT4P-201ENST00000623672 1708 ntBASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 AL645728.2-201ENST00000641974 660 ntBASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
AP4E1Q9UPM8 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms