Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
SHROOM4Q9ULL8 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 ARL16-202ENST00000570561 768 ntTSL 2 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
SHROOM4Q9ULL8 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
SHROOM4Q9ULL8 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 FOXO1B-201ENST00000504678 1527 ntBASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SHROOM4Q9ULL8 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 AC007541.1-201ENST00000570282 1469 ntBASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 PACS1-203ENST00000524815 628 ntTSL 4 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 AC011495.1-201ENST00000498085 584 ntBASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC31.46■■■□□ 2.63
SHROOM4Q9ULL8 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
SHROOM4Q9ULL8 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
SHROOM4Q9ULL8 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
SHROOM4Q9ULL8 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC31.45■■■□□ 2.63
SHROOM4Q9ULL8 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.63
SHROOM4Q9ULL8 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
SHROOM4Q9ULL8 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC31.45■■■□□ 2.63
SHROOM4Q9ULL8 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC31.45■■■□□ 2.63
SHROOM4Q9ULL8 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC31.45■■■□□ 2.62
SHROOM4Q9ULL8 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC31.45■■■□□ 2.62
SHROOM4Q9ULL8 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
SHROOM4Q9ULL8 GLI4-203ENST00000517468 963 ntTSL 5 BASIC31.45■■■□□ 2.62
SHROOM4Q9ULL8 BANF1P1-201ENST00000553684 263 ntBASIC31.45■■■□□ 2.62
SHROOM4Q9ULL8 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 PCDHB17P-201ENST00000539533 2393 ntBASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
SHROOM4Q9ULL8 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms