Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 AL355312.1-201ENST00000407115 2176 ntBASIC14.4□□□□□ -0.1
COL12A1Q99715 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 AC104306.2-201ENST00000451877 341 ntBASIC14.4□□□□□ -0.1
COL12A1Q99715 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.4□□□□□ -0.1
COL12A1Q99715 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.4□□□□□ -0.1
COL12A1Q99715 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 AC005695.3-201ENST00000614522 232 ntBASIC14.4□□□□□ -0.1
COL12A1Q99715 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.4□□□□□ -0.1
COL12A1Q99715 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
COL12A1Q99715 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 LYSMD4-203ENST00000378904 2122 ntBASIC14.4□□□□□ -0.1
COL12A1Q99715 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
COL12A1Q99715 AC004898.1-201ENST00000451057 766 ntBASIC14.4□□□□□ -0.1
COL12A1Q99715 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.4□□□□□ -0.1
COL12A1Q99715 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.4□□□□□ -0.1
COL12A1Q99715 RERG-205ENST00000537647 935 ntTSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC14.4□□□□□ -0.1
COL12A1Q99715 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.4□□□□□ -0.1
COL12A1Q99715 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.4□□□□□ -0.1
COL12A1Q99715 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.4□□□□□ -0.1
COL12A1Q99715 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
COL12A1Q99715 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.39□□□□□ -0.11
COL12A1Q99715 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.39□□□□□ -0.11
COL12A1Q99715 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 AC026954.1-201ENST00000429771 1293 ntBASIC14.39□□□□□ -0.11
COL12A1Q99715 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.39□□□□□ -0.11
COL12A1Q99715 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC14.39□□□□□ -0.11
COL12A1Q99715 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC14.39□□□□□ -0.11
COL12A1Q99715 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
COL12A1Q99715 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.39□□□□□ -0.11
COL12A1Q99715 AC092337.1-201ENST00000568699 1129 ntBASIC14.39□□□□□ -0.11
COL12A1Q99715 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC14.39□□□□□ -0.11
COL12A1Q99715 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
COL12A1Q99715 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.39□□□□□ -0.11
COL12A1Q99715 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL12A1Q99715 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC14.39□□□□□ -0.11
COL12A1Q99715 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
COL12A1Q99715 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL12A1Q99715 AC093503.3-201ENST00000624917 2352 ntBASIC14.38□□□□□ -0.11
COL12A1Q99715 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
COL12A1Q99715 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC14.38□□□□□ -0.11
COL12A1Q99715 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
COL12A1Q99715 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC14.38□□□□□ -0.11
COL12A1Q99715 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.38□□□□□ -0.11
COL12A1Q99715 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC14.38□□□□□ -0.11
COL12A1Q99715 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.38□□□□□ -0.11
COL12A1Q99715 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14.38□□□□□ -0.11
COL12A1Q99715 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
COL12A1Q99715 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL12A1Q99715 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms