Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 RPSAP43-201ENST00000402237 625 ntBASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 GPX1P2-201ENST00000429271 606 ntBASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 C20orf181-201ENST00000623918 480 ntBASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 AC105020.1-201ENST00000435356 2205 ntBASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTCHD1Q96NR3 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 AC092919.2-201ENST00000623631 1645 ntBASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 AP002490.2-201ENST00000524791 560 ntBASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 AC005829.1-201ENST00000570002 483 ntBASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 MIR4492-201ENST00000581627 80 ntBASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 CYP2A7P1-201ENST00000595391 815 ntBASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 AL078644.1-201ENST00000609881 752 ntBASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTCHD1Q96NR3 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
PTCHD1Q96NR3 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 MIR1233-2-201ENST00000408138 82 ntBASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 MIR1233-1-201ENST00000408722 82 ntBASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 FAM58CP-201ENST00000435741 640 ntBASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms