Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 HS6ST1P1-201ENST00000481504 1234 ntBASIC12.94□□□□□ -0.34
CCDC140Q96MF4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 AC018845.2-201ENST00000568326 409 ntBASIC12.94□□□□□ -0.34
CCDC140Q96MF4 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCDC140Q96MF4 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 AC005052.1-201ENST00000625181 2492 ntBASIC12.93□□□□□ -0.34
CCDC140Q96MF4 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC12.93□□□□□ -0.34
CCDC140Q96MF4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 RNU1-129P-201ENST00000384064 167 ntBASIC12.93□□□□□ -0.34
CCDC140Q96MF4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 AL031432.2-201ENST00000566714 459 ntBASIC12.93□□□□□ -0.34
CCDC140Q96MF4 AC106730.1-201ENST00000566722 1090 ntBASIC12.93□□□□□ -0.34
CCDC140Q96MF4 AL928711.1-201ENST00000570165 459 ntBASIC12.93□□□□□ -0.34
CCDC140Q96MF4 U1.21-201ENST00000580816 167 ntBASIC12.93□□□□□ -0.34
CCDC140Q96MF4 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 NME4-212ENST00000621774 904 ntTSL 3 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCDC140Q96MF4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 GPAA1P2-202ENST00000606848 1787 ntBASIC12.92□□□□□ -0.34
CCDC140Q96MF4 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 HCG24-202ENST00000414398 717 ntTSL 3 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
CCDC140Q96MF4 KRT18P2-201ENST00000447938 1258 ntBASIC12.92□□□□□ -0.34
CCDC140Q96MF4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms