Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MIR770-201ENST00000390219 98 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 HNRNPFP1-201ENST00000391730 1133 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 PCDHA12-202ENST00000613593 2588 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AMT-250ENST00000637682 1823 ntTSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 STK4-201ENST00000372801 2038 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 COX5BP2-201ENST00000392354 334 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 HLA-J-203ENST00000494367 1087 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 CIPC-205ENST00000555437 566 ntTSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MRPL20P1-201ENST00000400819 433 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AC068880.1-201ENST00000507289 2297 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 GNAS-203ENST00000306120 1878 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 AC002472.2-201ENST00000442739 958 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 DAD1-205ENST00000543337 501 ntTSL 3 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 EFTUD1P1-204ENST00000560401 1798 ntBASIC5.2□□□□□ -1.58
SYNE1Q8NF91 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SYNE1Q8NF91 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms