Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 AC006033.1-201ENST00000440505 426 ntBASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 LINC00895-201ENST00000629028 1637 ntBASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.68■□□□□ 0.74
SMC1BQ8NDV3 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 LINC00896-202ENST00000609602 2128 ntBASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 RPL7P3-201ENST00000441388 714 ntBASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMC1BQ8NDV3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 FLJ13224-201ENST00000313737 1514 ntBASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 AC131009.4-201ENST00000624048 1740 ntBASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 AC253536.4-201ENST00000440539 267 ntBASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 FADS2-212ENST00000522639 360 ntTSL 5 BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 FADS2-215ENST00000574708 385 ntTSL 3 BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 AC010328.2-201ENST00000597698 1111 ntBASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMC1BQ8NDV3 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 YBX1P6-201ENST00000442962 1002 ntBASIC19.65■□□□□ 0.74
SMC1BQ8NDV3 NME4-207ENST00000450036 985 ntTSL 3 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms