Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC145285.3-201ENST00000564603 959 ntBASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 GPR32P1-201ENST00000601788 811 ntBASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 AL355877.3-201ENST00000622820 899 ntBASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 AC116407.3-201ENST00000623905 1129 ntBASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 FAM215A-202ENST00000632077 792 ntBASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 AC104109.2-201ENST00000602919 1418 ntBASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 FLJ38576-201ENST00000623820 2459 ntBASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
PDLIM3Q53GG5 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 RPS2P28-201ENST00000314255 741 ntBASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 PON3-203ENST00000427422 894 ntTSL 3 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 VENTXP7-201ENST00000475503 772 ntBASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 AP003733.1-201ENST00000491725 852 ntBASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 AC040169.1-201ENST00000565382 521 ntBASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC13.96□□□□□ -0.17
PDLIM3Q53GG5 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 AC010460.3-201ENST00000511359 1579 ntBASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
PDLIM3Q53GG5 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC13.95□□□□□ -0.18
PDLIM3Q53GG5 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM3Q53GG5 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM3Q53GG5 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.95□□□□□ -0.18
PDLIM3Q53GG5 NSUN5P1-202ENST00000421140 1535 ntBASIC13.95□□□□□ -0.18
PDLIM3Q53GG5 NSUN5P2-203ENST00000457352 1529 ntBASIC13.95□□□□□ -0.18
PDLIM3Q53GG5 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM3Q53GG5 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.95□□□□□ -0.18
PDLIM3Q53GG5 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM3Q53GG5 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PDLIM3Q53GG5 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms