Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TNRC18P3-201ENST00000441896 2691 ntBASIC15.49■□□□□ 0.07
RNF4P78317 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.49■□□□□ 0.07
RNF4P78317 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.49■□□□□ 0.07
RNF4P78317 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.49■□□□□ 0.07
RNF4P78317 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.49■□□□□ 0.07
RNF4P78317 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
RNF4P78317 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 AC092474.2-201ENST00000424288 719 ntBASIC15.49■□□□□ 0.07
RNF4P78317 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.49■□□□□ 0.07
RNF4P78317 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.49■□□□□ 0.07
RNF4P78317 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.49■□□□□ 0.07
RNF4P78317 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
RNF4P78317 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.49■□□□□ 0.07
RNF4P78317 AC099522.2-201ENST00000607001 744 ntBASIC15.49■□□□□ 0.07
RNF4P78317 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
RNF4P78317 AL161645.1-201ENST00000622716 1255 ntBASIC15.49■□□□□ 0.07
RNF4P78317 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
RNF4P78317 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
RNF4P78317 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
RNF4P78317 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RNF4P78317 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.49■□□□□ 0.07
RNF4P78317 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.48■□□□□ 0.07
RNF4P78317 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
RNF4P78317 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
RNF4P78317 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.48■□□□□ 0.07
RNF4P78317 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC15.48■□□□□ 0.07
RNF4P78317 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.48■□□□□ 0.07
RNF4P78317 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.48■□□□□ 0.07
RNF4P78317 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.48■□□□□ 0.07
RNF4P78317 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.48■□□□□ 0.07
RNF4P78317 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.48■□□□□ 0.07
RNF4P78317 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 AC004967.1-201ENST00000453589 447 ntBASIC15.48■□□□□ 0.07
RNF4P78317 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.48■□□□□ 0.07
RNF4P78317 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.48■□□□□ 0.07
RNF4P78317 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.48■□□□□ 0.07
RNF4P78317 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.48■□□□□ 0.07
RNF4P78317 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.48■□□□□ 0.07
RNF4P78317 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.48■□□□□ 0.07
RNF4P78317 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
RNF4P78317 AL691403.2-201ENST00000618460 490 ntBASIC15.48■□□□□ 0.07
RNF4P78317 AC134684.3-201ENST00000641758 218 ntBASIC15.48■□□□□ 0.07
RNF4P78317 AL139011.1-202ENST00000642063 584 ntBASIC15.48■□□□□ 0.07
RNF4P78317 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 KRT8P39-201ENST00000396270 1433 ntBASIC15.48■□□□□ 0.07
RNF4P78317 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.48■□□□□ 0.07
RNF4P78317 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
RNF4P78317 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
RNF4P78317 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.48■□□□□ 0.07
RNF4P78317 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RNF4P78317 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
RNF4P78317 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.47■□□□□ 0.07
RNF4P78317 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
RNF4P78317 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 SNX33P1-201ENST00000592116 1762 ntBASIC15.47■□□□□ 0.07
RNF4P78317 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
RNF4P78317 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RNF4P78317 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms