Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.32■□□□□ 0.52
CLCN3P51790 SPCS2P1-201ENST00000561636 679 ntBASIC18.32■□□□□ 0.52
CLCN3P51790 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.32■□□□□ 0.52
CLCN3P51790 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC18.32■□□□□ 0.52
CLCN3P51790 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLCN3P51790 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CLCN3P51790 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLCN3P51790 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLCN3P51790 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLCN3P51790 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CLCN3P51790 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLCN3P51790 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
CLCN3P51790 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.32■□□□□ 0.52
CLCN3P51790 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CLCN3P51790 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLCN3P51790 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLCN3P51790 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CLCN3P51790 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
CLCN3P51790 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLCN3P51790 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CLCN3P51790 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
CLCN3P51790 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.31■□□□□ 0.52
CLCN3P51790 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.31■□□□□ 0.52
CLCN3P51790 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CLCN3P51790 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.31■□□□□ 0.52
CLCN3P51790 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.31■□□□□ 0.52
CLCN3P51790 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.31■□□□□ 0.52
CLCN3P51790 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.31■□□□□ 0.52
CLCN3P51790 PRYP6-201ENST00000514804 343 ntBASIC18.31■□□□□ 0.52
CLCN3P51790 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.31■□□□□ 0.52
CLCN3P51790 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.31■□□□□ 0.52
CLCN3P51790 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.31■□□□□ 0.52
CLCN3P51790 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.31■□□□□ 0.52
CLCN3P51790 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.31■□□□□ 0.52
CLCN3P51790 AC073389.1-201ENST00000595595 795 ntBASIC18.31■□□□□ 0.52
CLCN3P51790 LINC02084-201ENST00000606069 1096 ntBASIC18.31■□□□□ 0.52
CLCN3P51790 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.31■□□□□ 0.52
CLCN3P51790 FOXO1B-201ENST00000504678 1527 ntBASIC18.31■□□□□ 0.52
CLCN3P51790 AC005915.1-201ENST00000624912 2018 ntBASIC18.31■□□□□ 0.52
CLCN3P51790 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CLCN3P51790 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLCN3P51790 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.3■□□□□ 0.52
CLCN3P51790 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CLCN3P51790 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CLCN3P51790 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.3■□□□□ 0.52
CLCN3P51790 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.3■□□□□ 0.52
CLCN3P51790 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.3■□□□□ 0.52
CLCN3P51790 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.3■□□□□ 0.52
CLCN3P51790 BCRP1-201ENST00000444246 691 ntBASIC18.3■□□□□ 0.52
CLCN3P51790 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.3■□□□□ 0.52
CLCN3P51790 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CLCN3P51790 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.3■□□□□ 0.52
CLCN3P51790 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.3■□□□□ 0.52
CLCN3P51790 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.3■□□□□ 0.52
CLCN3P51790 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.3■□□□□ 0.52
CLCN3P51790 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.3■□□□□ 0.52
CLCN3P51790 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.3■□□□□ 0.52
CLCN3P51790 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC18.3■□□□□ 0.52
CLCN3P51790 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 AC073439.1-201ENST00000624121 1774 ntBASIC18.3■□□□□ 0.52
CLCN3P51790 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLCN3P51790 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.29■□□□□ 0.52
CLCN3P51790 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 AL512652.2-201ENST00000625156 1716 ntBASIC18.29■□□□□ 0.52
CLCN3P51790 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
CLCN3P51790 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLCN3P51790 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CLCN3P51790 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.29■□□□□ 0.52
CLCN3P51790 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms