Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.79■□□□□ 0.12
RFX3P48380 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
RFX3P48380 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC15.79■□□□□ 0.12
RFX3P48380 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
RFX3P48380 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.79■□□□□ 0.12
RFX3P48380 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.79■□□□□ 0.12
RFX3P48380 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.79■□□□□ 0.12
RFX3P48380 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RFX3P48380 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RFX3P48380 AP002469.2-201ENST00000531724 424 ntBASIC15.79■□□□□ 0.12
RFX3P48380 AC124947.2-201ENST00000547118 1133 ntBASIC15.79■□□□□ 0.12
RFX3P48380 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.79■□□□□ 0.12
RFX3P48380 CYGB-205ENST00000590175 830 ntTSL 3 BASIC15.79■□□□□ 0.12
RFX3P48380 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.79■□□□□ 0.12
RFX3P48380 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.79■□□□□ 0.12
RFX3P48380 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.79■□□□□ 0.12
RFX3P48380 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
RFX3P48380 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
RFX3P48380 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
RFX3P48380 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
RFX3P48380 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RFX3P48380 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.78■□□□□ 0.12
RFX3P48380 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
RFX3P48380 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.78■□□□□ 0.12
RFX3P48380 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 RPS2P28-201ENST00000314255 741 ntBASIC15.78■□□□□ 0.12
RFX3P48380 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.78■□□□□ 0.12
RFX3P48380 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.78■□□□□ 0.12
RFX3P48380 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.78■□□□□ 0.12
RFX3P48380 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.78■□□□□ 0.12
RFX3P48380 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.78■□□□□ 0.12
RFX3P48380 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.78■□□□□ 0.12
RFX3P48380 AC092910.1-201ENST00000482027 1129 ntBASIC15.78■□□□□ 0.12
RFX3P48380 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.78■□□□□ 0.12
RFX3P48380 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
RFX3P48380 AL160237.2-201ENST00000556165 472 ntBASIC15.78■□□□□ 0.12
RFX3P48380 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.78■□□□□ 0.12
RFX3P48380 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
RFX3P48380 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.78■□□□□ 0.12
RFX3P48380 VPS51-217ENST00000639871 243 ntTSL 5 BASIC15.78■□□□□ 0.12
RFX3P48380 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RFX3P48380 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.78■□□□□ 0.12
RFX3P48380 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
RFX3P48380 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RFX3P48380 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 PCDHB17P-201ENST00000539533 2393 ntBASIC15.78■□□□□ 0.12
RFX3P48380 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RFX3P48380 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RFX3P48380 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 AP002414.3-201ENST00000589352 1468 ntBASIC15.78■□□□□ 0.12
RFX3P48380 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RFX3P48380 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.77■□□□□ 0.12
RFX3P48380 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
RFX3P48380 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.77■□□□□ 0.12
RFX3P48380 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
RFX3P48380 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 MIR600HG-201ENST00000449175 5984 ntBASIC15.77■□□□□ 0.12
RFX3P48380 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RFX3P48380 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms