Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CDX1P47902 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDX1P47902 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CDX1P47902 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
CDX1P47902 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC13.75□□□□□ -0.21
CDX1P47902 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.75□□□□□ -0.21
CDX1P47902 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.75□□□□□ -0.21
CDX1P47902 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC13.75□□□□□ -0.21
CDX1P47902 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 COX5BP2-201ENST00000392354 334 ntBASIC13.75□□□□□ -0.21
CDX1P47902 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC13.75□□□□□ -0.21
CDX1P47902 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC13.75□□□□□ -0.21
CDX1P47902 RBSN-204ENST00000449050 903 ntTSL 2 BASIC13.75□□□□□ -0.21
CDX1P47902 SCARNA2-201ENST00000458748 420 ntBASIC13.75□□□□□ -0.21
CDX1P47902 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC13.75□□□□□ -0.21
CDX1P47902 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC13.75□□□□□ -0.21
CDX1P47902 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 AC104581.4-201ENST00000623126 3052 ntBASIC13.75□□□□□ -0.21
CDX1P47902 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.75□□□□□ -0.21
CDX1P47902 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CDX1P47902 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC13.75□□□□□ -0.21
CDX1P47902 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC13.75□□□□□ -0.21
CDX1P47902 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CDX1P47902 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CDX1P47902 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 MED29-202ENST00000594368 1471 ntTSL 2 BASIC13.74□□□□□ -0.21
CDX1P47902 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
CDX1P47902 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CDX1P47902 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CDX1P47902 CICP13-201ENST00000422015 2789 ntBASIC13.74□□□□□ -0.21
CDX1P47902 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
CDX1P47902 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CDX1P47902 SOD2-201ENST00000337404 991 ntTSL 2 BASIC13.74□□□□□ -0.21
CDX1P47902 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC13.74□□□□□ -0.21
CDX1P47902 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 PON3-205ENST00000451904 1053 ntTSL 3 BASIC13.74□□□□□ -0.21
CDX1P47902 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC13.74□□□□□ -0.21
CDX1P47902 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC13.74□□□□□ -0.21
CDX1P47902 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC13.74□□□□□ -0.21
CDX1P47902 MTDHP3-201ENST00000594186 672 ntBASIC13.74□□□□□ -0.21
CDX1P47902 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC13.74□□□□□ -0.21
CDX1P47902 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CDX1P47902 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CDX1P47902 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CDX1P47902 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms