Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.75■□□□□ 0.75
COL4A5P29400 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A5P29400 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL4A5P29400 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL4A5P29400 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC19.75■□□□□ 0.75
COL4A5P29400 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
COL4A5P29400 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.74■□□□□ 0.75
COL4A5P29400 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A5P29400 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.74■□□□□ 0.75
COL4A5P29400 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A5P29400 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
COL4A5P29400 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC19.74■□□□□ 0.75
COL4A5P29400 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A5P29400 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.74■□□□□ 0.75
COL4A5P29400 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A5P29400 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A5P29400 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.74■□□□□ 0.75
COL4A5P29400 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A5P29400 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A5P29400 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.74■□□□□ 0.75
COL4A5P29400 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC19.74■□□□□ 0.75
COL4A5P29400 MIR6869-201ENST00000619434 62 ntBASIC19.74■□□□□ 0.75
COL4A5P29400 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL4A5P29400 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.73■□□□□ 0.75
COL4A5P29400 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
COL4A5P29400 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
COL4A5P29400 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC19.73■□□□□ 0.75
COL4A5P29400 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.73■□□□□ 0.75
COL4A5P29400 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC19.73■□□□□ 0.75
COL4A5P29400 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.73■□□□□ 0.75
COL4A5P29400 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC19.73■□□□□ 0.75
COL4A5P29400 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC19.73■□□□□ 0.75
COL4A5P29400 LINC01115-203ENST00000606068 577 ntBASIC19.73■□□□□ 0.75
COL4A5P29400 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
COL4A5P29400 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
COL4A5P29400 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.73■□□□□ 0.75
COL4A5P29400 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.73■□□□□ 0.75
COL4A5P29400 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL4A5P29400 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
COL4A5P29400 AL136982.4-201ENST00000437689 1740 ntBASIC19.73■□□□□ 0.75
COL4A5P29400 GGT4P-201ENST00000623672 1708 ntBASIC19.73■□□□□ 0.75
COL4A5P29400 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
COL4A5P29400 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC19.72■□□□□ 0.75
COL4A5P29400 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC19.72■□□□□ 0.75
COL4A5P29400 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC19.72■□□□□ 0.75
COL4A5P29400 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
COL4A5P29400 CTBP2P5-201ENST00000454986 1264 ntBASIC19.72■□□□□ 0.75
COL4A5P29400 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC19.72■□□□□ 0.75
COL4A5P29400 AC099548.2-209ENST00000480264 625 ntBASIC19.72■□□□□ 0.75
COL4A5P29400 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC19.72■□□□□ 0.75
COL4A5P29400 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
COL4A5P29400 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC19.72■□□□□ 0.75
COL4A5P29400 MIR6069-201ENST00000620069 79 ntBASIC19.72■□□□□ 0.75
COL4A5P29400 AL158212.4-201ENST00000624062 1286 ntBASIC19.72■□□□□ 0.75
COL4A5P29400 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.72■□□□□ 0.75
COL4A5P29400 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
COL4A5P29400 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
COL4A5P29400 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.72■□□□□ 0.75
COL4A5P29400 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
COL4A5P29400 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
COL4A5P29400 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
COL4A5P29400 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL4A5P29400 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL4A5P29400 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
COL4A5P29400 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
COL4A5P29400 BCYRN1-201ENST00000418539 200 ntBASIC19.71■□□□□ 0.75
COL4A5P29400 ZNF767P-206ENST00000513792 565 ntBASIC19.71■□□□□ 0.75
COL4A5P29400 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC19.71■□□□□ 0.75
COL4A5P29400 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC19.71■□□□□ 0.75
COL4A5P29400 RARRES2P5-201ENST00000564013 466 ntBASIC19.71■□□□□ 0.75
COL4A5P29400 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms