Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 FGFR3P6-201ENST00000457012 610 ntBASIC16.88■□□□□ 0.29
PTPN4P29074 SCARNA2-201ENST00000458748 420 ntBASIC16.88■□□□□ 0.29
PTPN4P29074 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN4P29074 AC124947.2-201ENST00000547118 1133 ntBASIC16.88■□□□□ 0.29
PTPN4P29074 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.88■□□□□ 0.29
PTPN4P29074 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PTPN4P29074 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.88■□□□□ 0.29
PTPN4P29074 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
PTPN4P29074 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN4P29074 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PTPN4P29074 KRT8P47-201ENST00000604727 1398 ntBASIC16.88■□□□□ 0.29
PTPN4P29074 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN4P29074 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN4P29074 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.87■□□□□ 0.29
PTPN4P29074 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
PTPN4P29074 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
PTPN4P29074 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN4P29074 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN4P29074 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.87■□□□□ 0.29
PTPN4P29074 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.87■□□□□ 0.29
PTPN4P29074 PMS2P1-201ENST00000431037 1228 ntBASIC16.87■□□□□ 0.29
PTPN4P29074 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 AC018712.1-201ENST00000455767 687 ntBASIC16.87■□□□□ 0.29
PTPN4P29074 RNPS1P1-201ENST00000507437 918 ntBASIC16.87■□□□□ 0.29
PTPN4P29074 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.87■□□□□ 0.29
PTPN4P29074 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN4P29074 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.87■□□□□ 0.29
PTPN4P29074 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
PTPN4P29074 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.87■□□□□ 0.29
PTPN4P29074 GPALPP1-207ENST00000611650 899 ntBASIC16.87■□□□□ 0.29
PTPN4P29074 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN4P29074 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.87■□□□□ 0.29
PTPN4P29074 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.87■□□□□ 0.29
PTPN4P29074 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN4P29074 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.87■□□□□ 0.29
PTPN4P29074 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PTPN4P29074 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PTPN4P29074 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
PTPN4P29074 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
PTPN4P29074 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.86■□□□□ 0.29
PTPN4P29074 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
PTPN4P29074 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
PTPN4P29074 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.86■□□□□ 0.29
PTPN4P29074 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.86■□□□□ 0.29
PTPN4P29074 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.86■□□□□ 0.29
PTPN4P29074 AP001269.4-201ENST00000609611 512 ntBASIC16.86■□□□□ 0.29
PTPN4P29074 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.86■□□□□ 0.29
PTPN4P29074 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.86■□□□□ 0.29
PTPN4P29074 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.86■□□□□ 0.29
PTPN4P29074 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PTPN4P29074 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms