Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COL5A1P20908 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.82■□□□□ 0.12
COL5A1P20908 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COL5A1P20908 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.82■□□□□ 0.12
COL5A1P20908 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.82■□□□□ 0.12
COL5A1P20908 TMEM14DP-201ENST00000422205 345 ntBASIC15.82■□□□□ 0.12
COL5A1P20908 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
COL5A1P20908 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COL5A1P20908 AC007389.4-201ENST00000454674 793 ntBASIC15.82■□□□□ 0.12
COL5A1P20908 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.82■□□□□ 0.12
COL5A1P20908 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.82■□□□□ 0.12
COL5A1P20908 KRT17P8-201ENST00000540749 863 ntBASIC15.82■□□□□ 0.12
COL5A1P20908 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.82■□□□□ 0.12
COL5A1P20908 AL139011.1-202ENST00000642063 584 ntBASIC15.82■□□□□ 0.12
COL5A1P20908 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.82■□□□□ 0.12
COL5A1P20908 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL5A1P20908 AL671710.1-201ENST00000610245 2349 ntBASIC15.82■□□□□ 0.12
COL5A1P20908 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.82■□□□□ 0.12
COL5A1P20908 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
COL5A1P20908 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.81■□□□□ 0.12
COL5A1P20908 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.81■□□□□ 0.12
COL5A1P20908 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
COL5A1P20908 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
COL5A1P20908 AC023310.3-201ENST00000557027 670 ntBASIC15.81■□□□□ 0.12
COL5A1P20908 AC100756.1-201ENST00000562736 682 ntBASIC15.81■□□□□ 0.12
COL5A1P20908 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 AC138749.3-201ENST00000567691 622 ntBASIC15.81■□□□□ 0.12
COL5A1P20908 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 Six3os1_5.1-201ENST00000611000 271 ntBASIC15.81■□□□□ 0.12
COL5A1P20908 AC116165.1-201ENST00000611806 668 ntBASIC15.81■□□□□ 0.12
COL5A1P20908 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
COL5A1P20908 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.81■□□□□ 0.12
COL5A1P20908 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL5A1P20908 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.8■□□□□ 0.12
COL5A1P20908 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 RAB43P1-201ENST00000561790 589 ntBASIC15.8■□□□□ 0.12
COL5A1P20908 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
COL5A1P20908 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.8■□□□□ 0.12
COL5A1P20908 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.8■□□□□ 0.12
COL5A1P20908 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
COL5A1P20908 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
COL5A1P20908 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.8■□□□□ 0.12
COL5A1P20908 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
COL5A1P20908 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
COL5A1P20908 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.8■□□□□ 0.12
COL5A1P20908 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.8■□□□□ 0.12
COL5A1P20908 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC15.8■□□□□ 0.12
COL5A1P20908 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.8■□□□□ 0.12
COL5A1P20908 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL5A1P20908 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.8■□□□□ 0.12
COL5A1P20908 SPDYE17-201ENST00000412399 783 ntBASIC15.8■□□□□ 0.12
COL5A1P20908 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms