Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
MSH3P20585 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC16.68■□□□□ 0.26
MSH3P20585 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
MSH3P20585 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
MSH3P20585 POLD2P1-201ENST00000511220 997 ntBASIC16.68■□□□□ 0.26
MSH3P20585 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.68■□□□□ 0.26
MSH3P20585 AC018845.2-201ENST00000568326 409 ntBASIC16.68■□□□□ 0.26
MSH3P20585 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
MSH3P20585 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.68■□□□□ 0.26
MSH3P20585 AC023141.13-201ENST00000604991 943 ntBASIC16.68■□□□□ 0.26
MSH3P20585 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.68■□□□□ 0.26
MSH3P20585 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
MSH3P20585 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH3P20585 BCAR1-209ENST00000546196 1340 ntBASIC16.68■□□□□ 0.26
MSH3P20585 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.68■□□□□ 0.26
MSH3P20585 AC131009.4-201ENST00000624048 1740 ntBASIC16.67■□□□□ 0.26
MSH3P20585 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
MSH3P20585 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
MSH3P20585 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.67■□□□□ 0.26
MSH3P20585 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
MSH3P20585 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH3P20585 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH3P20585 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.67■□□□□ 0.26
MSH3P20585 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
MSH3P20585 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH3P20585 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
MSH3P20585 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
MSH3P20585 HCG4-201ENST00000418983 998 ntBASIC16.67■□□□□ 0.26
MSH3P20585 RHOQP3-201ENST00000437982 621 ntBASIC16.67■□□□□ 0.26
MSH3P20585 KRT18P2-201ENST00000447938 1258 ntBASIC16.67■□□□□ 0.26
MSH3P20585 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.67■□□□□ 0.26
MSH3P20585 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.67■□□□□ 0.26
MSH3P20585 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.67■□□□□ 0.26
MSH3P20585 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.67■□□□□ 0.26
MSH3P20585 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH3P20585 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
MSH3P20585 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
MSH3P20585 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 AL391256.1-201ENST00000443260 1855 ntBASIC16.67■□□□□ 0.26
MSH3P20585 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH3P20585 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.66■□□□□ 0.26
MSH3P20585 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
MSH3P20585 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
MSH3P20585 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 AC012569.1-201ENST00000591191 1524 ntBASIC16.66■□□□□ 0.26
MSH3P20585 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.66■□□□□ 0.26
MSH3P20585 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 AC011270.2-201ENST00000624293 2550 ntBASIC16.66■□□□□ 0.26
MSH3P20585 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
MSH3P20585 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.66■□□□□ 0.26
MSH3P20585 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
MSH3P20585 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.66■□□□□ 0.26
MSH3P20585 AC087641.1-201ENST00000557561 1021 ntBASIC16.66■□□□□ 0.26
MSH3P20585 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.66■□□□□ 0.26
MSH3P20585 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.66■□□□□ 0.26
MSH3P20585 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.66■□□□□ 0.26
MSH3P20585 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
MSH3P20585 AC004877.2-201ENST00000623941 599 ntBASIC16.66■□□□□ 0.26
MSH3P20585 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.66■□□□□ 0.26
MSH3P20585 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH3P20585 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
MSH3P20585 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms