Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.22■□□□□ 0.19
HOXC4P09017 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.22■□□□□ 0.19
HOXC4P09017 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXC4P09017 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.22■□□□□ 0.19
HOXC4P09017 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.22■□□□□ 0.19
HOXC4P09017 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXC4P09017 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.22■□□□□ 0.19
HOXC4P09017 SPCS2P1-201ENST00000561636 679 ntBASIC16.22■□□□□ 0.19
HOXC4P09017 MIR4453-201ENST00000584019 89 ntBASIC16.22■□□□□ 0.19
HOXC4P09017 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
HOXC4P09017 AL390955.2-201ENST00000603032 514 ntBASIC16.22■□□□□ 0.19
HOXC4P09017 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.22■□□□□ 0.19
HOXC4P09017 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
HOXC4P09017 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HOXC4P09017 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.22■□□□□ 0.19
HOXC4P09017 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXC4P09017 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.21■□□□□ 0.19
HOXC4P09017 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 HTR7P1-202ENST00000624664 4411 ntBASIC16.21■□□□□ 0.19
HOXC4P09017 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HOXC4P09017 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXC4P09017 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
HOXC4P09017 MIR943-201ENST00000401286 94 ntBASIC16.21■□□□□ 0.19
HOXC4P09017 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.21■□□□□ 0.19
HOXC4P09017 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.21■□□□□ 0.19
HOXC4P09017 AC069120.2-201ENST00000524091 540 ntBASIC16.21■□□□□ 0.19
HOXC4P09017 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 LINC01144-201ENST00000626198 1710 ntBASIC16.21■□□□□ 0.19
HOXC4P09017 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 AL035456.1-201ENST00000456064 1369 ntBASIC16.21■□□□□ 0.19
HOXC4P09017 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HOXC4P09017 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HOXC4P09017 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.21■□□□□ 0.19
HOXC4P09017 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.21■□□□□ 0.19
HOXC4P09017 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HOXC4P09017 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
HOXC4P09017 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.21■□□□□ 0.18
HOXC4P09017 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
HOXC4P09017 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HOXC4P09017 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.21■□□□□ 0.18
HOXC4P09017 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.21■□□□□ 0.18
HOXC4P09017 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXC4P09017 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXC4P09017 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
HOXC4P09017 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXC4P09017 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXC4P09017 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXC4P09017 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.2■□□□□ 0.18
HOXC4P09017 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.2■□□□□ 0.18
HOXC4P09017 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.2■□□□□ 0.18
HOXC4P09017 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.2■□□□□ 0.18
HOXC4P09017 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.2■□□□□ 0.18
HOXC4P09017 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 AC024267.1-201ENST00000582320 895 ntBASIC16.2■□□□□ 0.18
HOXC4P09017 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.2■□□□□ 0.18
HOXC4P09017 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXC4P09017 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.2■□□□□ 0.18
HOXC4P09017 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HOXC4P09017 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms