Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC21.85■■□□□ 1.09
COL3A1P02461 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC21.85■■□□□ 1.09
COL3A1P02461 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL3A1P02461 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL3A1P02461 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
COL3A1P02461 PCDHA12-202ENST00000613593 2588 ntBASIC21.85■■□□□ 1.09
COL3A1P02461 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC21.85■■□□□ 1.09
COL3A1P02461 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL3A1P02461 ALOX12P2-203ENST00000570921 1945 ntBASIC21.85■■□□□ 1.09
COL3A1P02461 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL3A1P02461 ME2P1-201ENST00000426028 1970 ntBASIC21.85■■□□□ 1.09
COL3A1P02461 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC21.85■■□□□ 1.09
COL3A1P02461 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL3A1P02461 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL3A1P02461 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL3A1P02461 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.85■■□□□ 1.09
COL3A1P02461 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC21.85■■□□□ 1.09
COL3A1P02461 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
COL3A1P02461 LINC01144-201ENST00000626198 1710 ntBASIC21.84■■□□□ 1.09
COL3A1P02461 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL3A1P02461 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL3A1P02461 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
COL3A1P02461 HLA-DRB6-201ENST00000411500 1235 ntBASIC21.84■■□□□ 1.09
COL3A1P02461 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC21.84■■□□□ 1.09
COL3A1P02461 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.84■■□□□ 1.09
COL3A1P02461 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.84■■□□□ 1.09
COL3A1P02461 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC21.84■■□□□ 1.09
COL3A1P02461 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.84■■□□□ 1.09
COL3A1P02461 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC21.84■■□□□ 1.09
COL3A1P02461 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL3A1P02461 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC21.84■■□□□ 1.09
COL3A1P02461 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC21.84■■□□□ 1.09
COL3A1P02461 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL3A1P02461 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL3A1P02461 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL3A1P02461 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL3A1P02461 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC21.84■■□□□ 1.09
COL3A1P02461 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL3A1P02461 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL3A1P02461 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL3A1P02461 TSSK5P-201ENST00000423978 907 ntBASIC21.83■■□□□ 1.09
COL3A1P02461 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC21.83■■□□□ 1.09
COL3A1P02461 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL3A1P02461 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC21.83■■□□□ 1.09
COL3A1P02461 COQ4-205ENST00000609948 956 ntTSL 2 BASIC21.83■■□□□ 1.09
COL3A1P02461 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL3A1P02461 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL3A1P02461 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
COL3A1P02461 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
COL3A1P02461 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC21.83■■□□□ 1.09
COL3A1P02461 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL3A1P02461 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.09
COL3A1P02461 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL3A1P02461 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC21.83■■□□□ 1.09
COL3A1P02461 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
COL3A1P02461 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL3A1P02461 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
COL3A1P02461 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL3A1P02461 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.08
COL3A1P02461 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL3A1P02461 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
COL3A1P02461 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
COL3A1P02461 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC21.83■■□□□ 1.08
COL3A1P02461 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL3A1P02461 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL3A1P02461 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC21.83■■□□□ 1.08
COL3A1P02461 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL3A1P02461 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
COL3A1P02461 BCRP1-201ENST00000444246 691 ntBASIC21.83■■□□□ 1.08
COL3A1P02461 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC21.83■■□□□ 1.08
COL3A1P02461 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC21.83■■□□□ 1.08
COL3A1P02461 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC21.83■■□□□ 1.08
COL3A1P02461 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC21.83■■□□□ 1.08
COL3A1P02461 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC21.83■■□□□ 1.08
COL3A1P02461 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.83■■□□□ 1.08
COL3A1P02461 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
COL3A1P02461 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL3A1P02461 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC21.82■■□□□ 1.08
COL3A1P02461 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC21.82■■□□□ 1.08
COL3A1P02461 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC21.82■■□□□ 1.08
COL3A1P02461 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC21.82■■□□□ 1.08
COL3A1P02461 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC21.82■■□□□ 1.08
COL3A1P02461 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21.82■■□□□ 1.08
COL3A1P02461 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC21.82■■□□□ 1.08
COL3A1P02461 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.82■■□□□ 1.08
COL3A1P02461 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL3A1P02461 NKILA-202ENST00000614771 2598 ntBASIC21.82■■□□□ 1.08
COL3A1P02461 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms