Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 AC008677.1-201ENST00000519230 1561 ntBASIC16.29■□□□□ 0.2
TNFP01375 AC139713.2-201ENST00000641328 2723 ntBASIC16.29■□□□□ 0.2
TNFP01375 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
TNFP01375 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.29■□□□□ 0.2
TNFP01375 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.29■□□□□ 0.2
TNFP01375 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TNFP01375 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.28■□□□□ 0.2
TNFP01375 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.28■□□□□ 0.2
TNFP01375 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.28■□□□□ 0.2
TNFP01375 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.28■□□□□ 0.2
TNFP01375 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.28■□□□□ 0.2
TNFP01375 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.28■□□□□ 0.2
TNFP01375 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.28■□□□□ 0.2
TNFP01375 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.28■□□□□ 0.2
TNFP01375 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.28■□□□□ 0.2
TNFP01375 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.28■□□□□ 0.2
TNFP01375 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.28■□□□□ 0.2
TNFP01375 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.28■□□□□ 0.2
TNFP01375 AC125807.1-201ENST00000483097 614 ntBASIC16.28■□□□□ 0.2
TNFP01375 PRYP6-201ENST00000514804 343 ntBASIC16.28■□□□□ 0.2
TNFP01375 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.28■□□□□ 0.2
TNFP01375 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.28■□□□□ 0.2
TNFP01375 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.28■□□□□ 0.2
TNFP01375 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.28■□□□□ 0.2
TNFP01375 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.28■□□□□ 0.2
TNFP01375 AC073389.1-201ENST00000595595 795 ntBASIC16.28■□□□□ 0.2
TNFP01375 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.28■□□□□ 0.2
TNFP01375 MIR6080-201ENST00000617359 66 ntBASIC16.28■□□□□ 0.2
TNFP01375 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
TNFP01375 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
TNFP01375 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.28■□□□□ 0.2
TNFP01375 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.28■□□□□ 0.2
TNFP01375 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.28■□□□□ 0.2
TNFP01375 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TNFP01375 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TNFP01375 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.28■□□□□ 0.2
TNFP01375 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TNFP01375 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.27■□□□□ 0.2
TNFP01375 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TNFP01375 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.27■□□□□ 0.2
TNFP01375 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TNFP01375 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TNFP01375 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TNFP01375 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.27■□□□□ 0.2
TNFP01375 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.27■□□□□ 0.2
TNFP01375 MIR943-201ENST00000401286 94 ntBASIC16.27■□□□□ 0.2
TNFP01375 AC107890.1-201ENST00000422478 521 ntBASIC16.27■□□□□ 0.2
TNFP01375 FAM8A3P-201ENST00000427218 844 ntBASIC16.27■□□□□ 0.2
TNFP01375 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.27■□□□□ 0.2
TNFP01375 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.27■□□□□ 0.2
TNFP01375 RNA5SP421-201ENST00000516864 134 ntBASIC16.27■□□□□ 0.2
TNFP01375 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.27■□□□□ 0.2
TNFP01375 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.27■□□□□ 0.2
TNFP01375 SPCS2P1-201ENST00000561636 679 ntBASIC16.27■□□□□ 0.2
TNFP01375 AC005498.2-205ENST00000593218 784 ntBASIC16.27■□□□□ 0.2
TNFP01375 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.27■□□□□ 0.2
TNFP01375 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.27■□□□□ 0.2
TNFP01375 AL139011.1-202ENST00000642063 584 ntBASIC16.27■□□□□ 0.2
TNFP01375 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TNFP01375 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.27■□□□□ 0.2
TNFP01375 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
TNFP01375 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TNFP01375 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
TNFP01375 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.27■□□□□ 0.19
TNFP01375 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms