Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMA1Q9UHB6 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 CYP2A7P1-201ENST00000595391 815 ntBASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 GPAA1P2-202ENST00000606848 1787 ntBASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LIMA1Q9UHB6 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 PI4KAP1-204ENST00000612579 1703 ntBASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 POU5F1P6-201ENST00000466990 990 ntBASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 KRT18P35-201ENST00000510488 1269 ntBASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 AC107918.2-201ENST00000530817 355 ntBASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 PAUPAR-201ENST00000630360 2965 ntBASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 AC006504.4-201ENST00000592118 1568 ntBASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LIMA1Q9UHB6 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 LINC01144-201ENST00000626198 1710 ntBASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 PCGF3-213ENST00000620529 1899 ntBASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 AC093458.2-201ENST00000623150 629 ntBASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 AL805961.1-202ENST00000641562 540 ntBASIC18.29■□□□□ 0.52
LIMA1Q9UHB6 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms