Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
BLOC1S4Q9NUP1 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
BLOC1S4Q9NUP1 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BLOC1S4Q9NUP1 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
BLOC1S4Q9NUP1 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
BLOC1S4Q9NUP1 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
BLOC1S4Q9NUP1 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
BLOC1S4Q9NUP1 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 AL591424.1-201ENST00000442569 1213 ntBASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 AC138932.1-201ENST00000534164 6830 ntBASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
BLOC1S4Q9NUP1 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 AC140658.5-201ENST00000438532 169 ntBASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 RNA5SP416-201ENST00000516838 111 ntBASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 PDPK2P-202ENST00000562415 1191 ntBASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 AL009183.1-201ENST00000603760 355 ntBASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
BLOC1S4Q9NUP1 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 PMS2P4-201ENST00000412466 1052 ntBASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 PGAM5P1-201ENST00000518923 814 ntBASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
BLOC1S4Q9NUP1 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
BLOC1S4Q9NUP1 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
BLOC1S4Q9NUP1 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms