Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CISHQ9NSE2 AC074386.1-202ENST00000463561 864 ntBASIC17.85■□□□□ 0.45
CISHQ9NSE2 PMS2P7-201ENST00000506558 1336 ntBASIC17.85■□□□□ 0.45
CISHQ9NSE2 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.85■□□□□ 0.45
CISHQ9NSE2 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CISHQ9NSE2 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.85■□□□□ 0.45
CISHQ9NSE2 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.85■□□□□ 0.45
CISHQ9NSE2 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.85■□□□□ 0.45
CISHQ9NSE2 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.85■□□□□ 0.45
CISHQ9NSE2 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CISHQ9NSE2 AC040169.1-201ENST00000565382 521 ntBASIC17.85■□□□□ 0.45
CISHQ9NSE2 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.85■□□□□ 0.45
CISHQ9NSE2 AL031055.1-201ENST00000606362 631 ntBASIC17.85■□□□□ 0.45
CISHQ9NSE2 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.85■□□□□ 0.45
CISHQ9NSE2 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.85■□□□□ 0.45
CISHQ9NSE2 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CISHQ9NSE2 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CISHQ9NSE2 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CISHQ9NSE2 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CISHQ9NSE2 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 AC092919.2-201ENST00000623631 1645 ntBASIC17.84■□□□□ 0.45
CISHQ9NSE2 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 AL031731.1-201ENST00000642131 2094 ntBASIC17.84■□□□□ 0.45
CISHQ9NSE2 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CISHQ9NSE2 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CISHQ9NSE2 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
CISHQ9NSE2 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CISHQ9NSE2 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.83■□□□□ 0.45
CISHQ9NSE2 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CISHQ9NSE2 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CISHQ9NSE2 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CISHQ9NSE2 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CISHQ9NSE2 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.83■□□□□ 0.45
CISHQ9NSE2 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CISHQ9NSE2 OR6D1P-203ENST00000641209 4860 ntBASIC17.83■□□□□ 0.45
CISHQ9NSE2 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CISHQ9NSE2 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CISHQ9NSE2 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CISHQ9NSE2 AC140658.5-201ENST00000438532 169 ntBASIC17.83■□□□□ 0.44
CISHQ9NSE2 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 MIR3909-201ENST00000579518 119 ntBASIC17.83■□□□□ 0.44
CISHQ9NSE2 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CISHQ9NSE2 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CISHQ9NSE2 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CISHQ9NSE2 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 GGT4P-201ENST00000623672 1708 ntBASIC17.83■□□□□ 0.44
CISHQ9NSE2 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CISHQ9NSE2 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.83■□□□□ 0.44
CISHQ9NSE2 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CISHQ9NSE2 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CISHQ9NSE2 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CISHQ9NSE2 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CISHQ9NSE2 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CISHQ9NSE2 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CISHQ9NSE2 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.82■□□□□ 0.44
CISHQ9NSE2 PMS2P4-201ENST00000412466 1052 ntBASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms