Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TRIM39Q9HCM9 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
TRIM39Q9HCM9 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 HMGA1P7-201ENST00000406908 502 ntBASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 MIR4492-201ENST00000581627 80 ntBASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 PCDHB17P-201ENST00000539533 2393 ntBASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM39Q9HCM9 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 AC068418.2-201ENST00000577309 3703 ntBASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 UPF3AP3-201ENST00000420996 769 ntBASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 AP002490.2-201ENST00000524791 560 ntBASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 C20orf181-201ENST00000623918 480 ntBASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM39Q9HCM9 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 RPSAP43-201ENST00000402237 625 ntBASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 AC112482.1-201ENST00000492080 688 ntBASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 AC068137.2-201ENST00000605408 478 ntBASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 AC013467.2-201ENST00000605472 835 ntBASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM39Q9HCM9 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms