Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 AL391005.1-201ENST00000623953 2435 ntBASIC12.6□□□□□ -0.39
LINC00477Q96M19 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 TOP3BP1-201ENST00000420768 1380 ntBASIC12.6□□□□□ -0.39
LINC00477Q96M19 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 FAM210CP-201ENST00000445714 574 ntBASIC12.6□□□□□ -0.39
LINC00477Q96M19 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 ARL16-209ENST00000573715 763 ntTSL 3 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 RMI2-205ENST00000576027 818 ntTSL 2 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 ARL16-211ENST00000576135 694 ntTSL 3 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC12.6□□□□□ -0.39
LINC00477Q96M19 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 AC067930.6-201ENST00000623257 4947 ntBASIC12.6□□□□□ -0.39
LINC00477Q96M19 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC12.6□□□□□ -0.39
LINC00477Q96M19 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 ME2P1-201ENST00000426028 1970 ntBASIC12.6□□□□□ -0.39
LINC00477Q96M19 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LINC00477Q96M19 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 ATP5G2P1-201ENST00000433580 426 ntBASIC12.59□□□□□ -0.39
LINC00477Q96M19 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 AC132008.2-207ENST00000454517 770 ntBASIC12.59□□□□□ -0.39
LINC00477Q96M19 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 AC091076.1-201ENST00000610741 619 ntBASIC12.59□□□□□ -0.39
LINC00477Q96M19 NPAP1P7-201ENST00000613027 823 ntBASIC12.59□□□□□ -0.39
LINC00477Q96M19 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
LINC00477Q96M19 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LINC00477Q96M19 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
LINC00477Q96M19 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC12.58□□□□□ -0.39
LINC00477Q96M19 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms