Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PP12613-201ENST00000424958 2230 ntBASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HDDC3Q8N4P3 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 TUBB8P12-201ENST00000308911 1335 ntBASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 TUBB7P-202ENST00000428444 1305 ntBASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 TUBB8P7-204ENST00000567960 1332 ntBASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 FAM207CP-201ENST00000443486 507 ntBASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 AC027307.2-201ENST00000591252 911 ntBASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 AC021097.1-201ENST00000607902 574 ntBASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HDDC3Q8N4P3 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 GPS2P2-201ENST00000430745 888 ntBASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 HLA-J-202ENST00000469281 1241 ntBASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 AC027307.3-201ENST00000594262 1100 ntBASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 AC008267.7-201ENST00000624570 1194 ntBASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
HDDC3Q8N4P3 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
HDDC3Q8N4P3 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
HDDC3Q8N4P3 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms