Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NPAS3Q8IXF0 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 SPTLC1P1-201ENST00000447199 261 ntBASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 AL596325.1-201ENST00000563991 1082 ntBASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 AC004233.3-201ENST00000607794 1269 ntBASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
NPAS3Q8IXF0 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 RN7SL692P-201ENST00000464677 288 ntBASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 CR383656.12-201ENST00000549567 513 ntBASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 AL035456.1-201ENST00000456064 1369 ntBASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS3Q8IXF0 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 AL353705.2-201ENST00000428243 662 ntBASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS3Q8IXF0 AC009477.1-201ENST00000452936 217 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms