Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 COX5BP2-201ENST00000392354 334 ntBASIC16.14■□□□□ 0.17
COL28A1Q2UY09 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 AC009118.2-201ENST00000613275 655 ntBASIC16.14■□□□□ 0.17
COL28A1Q2UY09 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 AL355312.1-201ENST00000407115 2176 ntBASIC16.14■□□□□ 0.17
COL28A1Q2UY09 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL28A1Q2UY09 PI4KAP1-204ENST00000612579 1703 ntBASIC16.14■□□□□ 0.17
COL28A1Q2UY09 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 AL391005.1-201ENST00000623953 2435 ntBASIC16.13■□□□□ 0.17
COL28A1Q2UY09 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 AC099522.2-201ENST00000607001 744 ntBASIC16.13■□□□□ 0.17
COL28A1Q2UY09 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 REXO1L11P-201ENST00000620964 1927 ntBASIC16.13■□□□□ 0.17
COL28A1Q2UY09 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.13■□□□□ 0.17
COL28A1Q2UY09 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 RN7SL589P-201ENST00000481268 310 ntBASIC16.12■□□□□ 0.17
COL28A1Q2UY09 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
COL28A1Q2UY09 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms