Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NUS1P2-201ENST00000417358 873 ntBASIC16.51■□□□□ 0.23
PKNOX1P55347 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.51■□□□□ 0.23
PKNOX1P55347 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 PRYP5-201ENST00000451909 266 ntBASIC16.51■□□□□ 0.23
PKNOX1P55347 KRT16P4-201ENST00000453883 522 ntBASIC16.51■□□□□ 0.23
PKNOX1P55347 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PKNOX1P55347 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.51■□□□□ 0.23
PKNOX1P55347 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.51■□□□□ 0.23
PKNOX1P55347 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.51■□□□□ 0.23
PKNOX1P55347 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.51■□□□□ 0.23
PKNOX1P55347 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.51■□□□□ 0.23
PKNOX1P55347 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.51■□□□□ 0.23
PKNOX1P55347 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.51■□□□□ 0.23
PKNOX1P55347 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PKNOX1P55347 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.51■□□□□ 0.23
PKNOX1P55347 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.5■□□□□ 0.23
PKNOX1P55347 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
PKNOX1P55347 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
PKNOX1P55347 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.5■□□□□ 0.23
PKNOX1P55347 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 HLA-J-202ENST00000469281 1241 ntBASIC16.5■□□□□ 0.23
PKNOX1P55347 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.5■□□□□ 0.23
PKNOX1P55347 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.5■□□□□ 0.23
PKNOX1P55347 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.5■□□□□ 0.23
PKNOX1P55347 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PKNOX1P55347 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 AC091076.1-201ENST00000610741 619 ntBASIC16.5■□□□□ 0.23
PKNOX1P55347 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.5■□□□□ 0.23
PKNOX1P55347 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.5■□□□□ 0.23
PKNOX1P55347 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.5■□□□□ 0.23
PKNOX1P55347 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 AP005117.1-201ENST00000584346 1413 ntBASIC16.5■□□□□ 0.23
PKNOX1P55347 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.5■□□□□ 0.23
PKNOX1P55347 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.5■□□□□ 0.23
PKNOX1P55347 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PKNOX1P55347 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.49■□□□□ 0.23
PKNOX1P55347 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PKNOX1P55347 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.49■□□□□ 0.23
PKNOX1P55347 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
PKNOX1P55347 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.49■□□□□ 0.23
PKNOX1P55347 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.49■□□□□ 0.23
PKNOX1P55347 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.49■□□□□ 0.23
PKNOX1P55347 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.49■□□□□ 0.23
PKNOX1P55347 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.49■□□□□ 0.23
PKNOX1P55347 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 KRT8P49-201ENST00000604166 1432 ntBASIC16.49■□□□□ 0.23
PKNOX1P55347 AL353135.1-201ENST00000606729 504 ntBASIC16.49■□□□□ 0.23
PKNOX1P55347 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.49■□□□□ 0.23
PKNOX1P55347 AC092119.3-201ENST00000612618 583 ntBASIC16.49■□□□□ 0.23
PKNOX1P55347 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.49■□□□□ 0.23
PKNOX1P55347 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 AL358472.4-201ENST00000633140 710 ntBASIC16.49■□□□□ 0.23
PKNOX1P55347 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.49■□□□□ 0.23
PKNOX1P55347 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.49■□□□□ 0.23
PKNOX1P55347 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
PKNOX1P55347 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PKNOX1P55347 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PKNOX1P55347 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.49■□□□□ 0.23
PKNOX1P55347 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
PKNOX1P55347 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 AL590787.1-201ENST00000568856 1315 ntBASIC16.48■□□□□ 0.23
PKNOX1P55347 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.48■□□□□ 0.23
PKNOX1P55347 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PKNOX1P55347 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms