Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
CTCFP49711 ZNF767P-206ENST00000513792 565 ntBASIC19.31■□□□□ 0.68
CTCFP49711 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.31■□□□□ 0.68
CTCFP49711 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19.31■□□□□ 0.68
CTCFP49711 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.31■□□□□ 0.68
CTCFP49711 MIR4722-201ENST00000578292 60 ntBASIC19.31■□□□□ 0.68
CTCFP49711 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.31■□□□□ 0.68
CTCFP49711 AL365330.1-201ENST00000607459 531 ntBASIC19.31■□□□□ 0.68
CTCFP49711 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.31■□□□□ 0.68
CTCFP49711 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.31■□□□□ 0.68
CTCFP49711 AL033527.5-201ENST00000641382 801 ntBASIC19.31■□□□□ 0.68
CTCFP49711 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.31■□□□□ 0.68
CTCFP49711 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CTCFP49711 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
CTCFP49711 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC19.31■□□□□ 0.68
CTCFP49711 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CTCFP49711 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CTCFP49711 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.3■□□□□ 0.68
CTCFP49711 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CTCFP49711 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
CTCFP49711 AC073592.3-201ENST00000625118 1834 ntBASIC19.3■□□□□ 0.68
CTCFP49711 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.3■□□□□ 0.68
CTCFP49711 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.3■□□□□ 0.68
CTCFP49711 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 AP000997.3-201ENST00000623333 2250 ntBASIC19.3■□□□□ 0.68
CTCFP49711 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 HLA-H-201ENST00000383620 1096 ntBASIC19.3■□□□□ 0.68
CTCFP49711 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC19.3■□□□□ 0.68
CTCFP49711 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.3■□□□□ 0.68
CTCFP49711 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC19.3■□□□□ 0.68
CTCFP49711 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.3■□□□□ 0.68
CTCFP49711 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CTCFP49711 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.3■□□□□ 0.68
CTCFP49711 AC093726.1-201ENST00000608064 963 ntBASIC19.3■□□□□ 0.68
CTCFP49711 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
CTCFP49711 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC19.3■□□□□ 0.68
CTCFP49711 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.3■□□□□ 0.68
CTCFP49711 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
CTCFP49711 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CTCFP49711 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC19.29■□□□□ 0.68
CTCFP49711 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.29■□□□□ 0.68
CTCFP49711 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.29■□□□□ 0.68
CTCFP49711 RNU1-129P-201ENST00000384064 167 ntBASIC19.29■□□□□ 0.68
CTCFP49711 GGCT-203ENST00000409144 836 ntTSL 2 BASIC19.29■□□□□ 0.68
CTCFP49711 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.29■□□□□ 0.68
CTCFP49711 FO681548.1-201ENST00000455617 1132 ntBASIC19.29■□□□□ 0.68
CTCFP49711 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.29■□□□□ 0.68
CTCFP49711 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.29■□□□□ 0.68
CTCFP49711 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.29■□□□□ 0.68
CTCFP49711 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC19.29■□□□□ 0.68
CTCFP49711 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 MIR3909-201ENST00000579518 119 ntBASIC19.29■□□□□ 0.68
CTCFP49711 U1.21-201ENST00000580816 167 ntBASIC19.29■□□□□ 0.68
CTCFP49711 AC233724.13-201ENST00000598383 410 ntBASIC19.29■□□□□ 0.68
CTCFP49711 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 5S_rRNA.22-201ENST00000614916 106 ntBASIC19.29■□□□□ 0.68
CTCFP49711 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.29■□□□□ 0.68
CTCFP49711 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC19.29■□□□□ 0.68
CTCFP49711 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.29■□□□□ 0.68
CTCFP49711 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CTCFP49711 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC19.29■□□□□ 0.68
CTCFP49711 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.29■□□□□ 0.68
CTCFP49711 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.28■□□□□ 0.68
CTCFP49711 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CTCFP49711 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CTCFP49711 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms