Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC21.72■■□□□ 1.07
COL18A1P39060 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC21.72■■□□□ 1.07
COL18A1P39060 BNIP3P42-201ENST00000454982 569 ntBASIC21.72■■□□□ 1.07
COL18A1P39060 CROCCP4-201ENST00000457096 498 ntBASIC21.72■■□□□ 1.07
COL18A1P39060 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC21.72■■□□□ 1.07
COL18A1P39060 BNIP3P29-201ENST00000598302 571 ntBASIC21.72■■□□□ 1.07
COL18A1P39060 AC011447.5-201ENST00000616168 564 ntBASIC21.72■■□□□ 1.07
COL18A1P39060 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
COL18A1P39060 AL136982.4-201ENST00000437689 1740 ntBASIC21.72■■□□□ 1.07
COL18A1P39060 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL18A1P39060 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL18A1P39060 CLK3P2-201ENST00000427566 1453 ntBASIC21.72■■□□□ 1.07
COL18A1P39060 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL18A1P39060 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL18A1P39060 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
COL18A1P39060 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL18A1P39060 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL18A1P39060 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL18A1P39060 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.72■■□□□ 1.07
COL18A1P39060 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COL18A1P39060 LINC01115-203ENST00000606068 577 ntBASIC21.71■■□□□ 1.07
COL18A1P39060 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COL18A1P39060 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC21.71■■□□□ 1.07
COL18A1P39060 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COL18A1P39060 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL18A1P39060 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL18A1P39060 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL18A1P39060 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COL18A1P39060 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL18A1P39060 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL18A1P39060 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC21.71■■□□□ 1.07
COL18A1P39060 AC067852.2-201ENST00000590513 2313 ntBASIC21.71■■□□□ 1.07
COL18A1P39060 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
COL18A1P39060 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL18A1P39060 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
COL18A1P39060 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL18A1P39060 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC21.71■■□□□ 1.07
COL18A1P39060 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC21.71■■□□□ 1.07
COL18A1P39060 MIR4525-201ENST00000580000 75 ntBASIC21.71■■□□□ 1.07
COL18A1P39060 MIR8072-201ENST00000614241 80 ntBASIC21.71■■□□□ 1.07
COL18A1P39060 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL18A1P39060 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC21.71■■□□□ 1.07
COL18A1P39060 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL18A1P39060 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL18A1P39060 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
COL18A1P39060 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC21.7■■□□□ 1.07
COL18A1P39060 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
COL18A1P39060 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
COL18A1P39060 REXO1L6P-201ENST00000603433 1515 ntBASIC21.7■■□□□ 1.07
COL18A1P39060 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL18A1P39060 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC21.7■■□□□ 1.06
COL18A1P39060 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL18A1P39060 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC21.7■■□□□ 1.06
COL18A1P39060 CYP4F24P-201ENST00000586049 1580 ntBASIC21.7■■□□□ 1.06
COL18A1P39060 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.7■■□□□ 1.06
COL18A1P39060 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL18A1P39060 AL645728.1-201ENST00000366221 2101 ntBASIC21.7■■□□□ 1.06
COL18A1P39060 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL18A1P39060 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC21.7■■□□□ 1.06
COL18A1P39060 FADS2-205ENST00000517839 469 ntTSL 3 BASIC21.7■■□□□ 1.06
COL18A1P39060 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC21.7■■□□□ 1.06
COL18A1P39060 MIR6069-201ENST00000620069 79 ntBASIC21.7■■□□□ 1.06
COL18A1P39060 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
COL18A1P39060 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL18A1P39060 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.7■■□□□ 1.06
COL18A1P39060 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL18A1P39060 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL18A1P39060 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC21.7■■□□□ 1.06
COL18A1P39060 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL18A1P39060 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC21.7■■□□□ 1.06
COL18A1P39060 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.7■■□□□ 1.06
COL18A1P39060 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.7■■□□□ 1.06
COL18A1P39060 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL18A1P39060 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
COL18A1P39060 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL18A1P39060 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL18A1P39060 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC21.69■■□□□ 1.06
COL18A1P39060 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC21.69■■□□□ 1.06
COL18A1P39060 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC21.69■■□□□ 1.06
COL18A1P39060 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
COL18A1P39060 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC21.69■■□□□ 1.06
COL18A1P39060 AC092552.1-201ENST00000547243 906 ntBASIC21.69■■□□□ 1.06
COL18A1P39060 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC21.69■■□□□ 1.06
COL18A1P39060 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC21.69■■□□□ 1.06
COL18A1P39060 PAM16-204ENST00000571941 674 ntTSL 3 BASIC21.69■■□□□ 1.06
COL18A1P39060 AL158212.4-201ENST00000624062 1286 ntBASIC21.69■■□□□ 1.06
COL18A1P39060 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL18A1P39060 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL18A1P39060 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
COL18A1P39060 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC21.69■■□□□ 1.06
COL18A1P39060 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC21.69■■□□□ 1.06
COL18A1P39060 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL18A1P39060 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC21.69■■□□□ 1.06
COL18A1P39060 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL18A1P39060 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
COL18A1P39060 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC21.69■■□□□ 1.06
COL18A1P39060 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
COL18A1P39060 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC21.69■■□□□ 1.06
COL18A1P39060 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL18A1P39060 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms