Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.06■□□□□ 0.16
MSX2P35548 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.06■□□□□ 0.16
MSX2P35548 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.06■□□□□ 0.16
MSX2P35548 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.06■□□□□ 0.16
MSX2P35548 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.06■□□□□ 0.16
MSX2P35548 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.06■□□□□ 0.16
MSX2P35548 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
MSX2P35548 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 AL353593.2-201ENST00000602529 1483 ntBASIC16.06■□□□□ 0.16
MSX2P35548 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
MSX2P35548 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.06■□□□□ 0.16
MSX2P35548 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
MSX2P35548 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.06■□□□□ 0.16
MSX2P35548 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.06■□□□□ 0.16
MSX2P35548 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.06■□□□□ 0.16
MSX2P35548 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.06■□□□□ 0.16
MSX2P35548 AC093827.2-201ENST00000512654 315 ntBASIC16.06■□□□□ 0.16
MSX2P35548 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.06■□□□□ 0.16
MSX2P35548 DUX4L17-201ENST00000557360 1267 ntBASIC16.06■□□□□ 0.16
MSX2P35548 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.06■□□□□ 0.16
MSX2P35548 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
MSX2P35548 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
MSX2P35548 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
MSX2P35548 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
MSX2P35548 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
MSX2P35548 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.05■□□□□ 0.16
MSX2P35548 AC132938.5-201ENST00000624980 1813 ntBASIC16.05■□□□□ 0.16
MSX2P35548 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.05■□□□□ 0.16
MSX2P35548 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
MSX2P35548 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.05■□□□□ 0.16
MSX2P35548 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.05■□□□□ 0.16
MSX2P35548 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.05■□□□□ 0.16
MSX2P35548 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
MSX2P35548 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.05■□□□□ 0.16
MSX2P35548 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.05■□□□□ 0.16
MSX2P35548 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
MSX2P35548 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.05■□□□□ 0.16
MSX2P35548 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.05■□□□□ 0.16
MSX2P35548 VENTXP5-201ENST00000523979 775 ntBASIC16.05■□□□□ 0.16
MSX2P35548 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
MSX2P35548 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.05■□□□□ 0.16
MSX2P35548 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 AL356309.3-201ENST00000624132 1934 ntBASIC16.05■□□□□ 0.16
MSX2P35548 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.05■□□□□ 0.16
MSX2P35548 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSX2P35548 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.04■□□□□ 0.16
MSX2P35548 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
MSX2P35548 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSX2P35548 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms