Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 MED16-214ENST00000617672 554 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXD3P31249 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXD3P31249 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
HOXD3P31249 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC12.98□□□□□ -0.33
HOXD3P31249 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC12.98□□□□□ -0.33
HOXD3P31249 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
HOXD3P31249 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
HOXD3P31249 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
HOXD3P31249 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
HOXD3P31249 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC12.97□□□□□ -0.33
HOXD3P31249 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
HOXD3P31249 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC12.97□□□□□ -0.33
HOXD3P31249 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXD3P31249 STOM-202ENST00000347359 870 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXD3P31249 CALY-203ENST00000368558 825 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXD3P31249 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
HOXD3P31249 CD99-202ENST00000381180 530 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXD3P31249 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC12.97□□□□□ -0.33
HOXD3P31249 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXD3P31249 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
HOXD3P31249 DAD1-205ENST00000543337 501 ntTSL 3 BASIC12.97□□□□□ -0.33
HOXD3P31249 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXD3P31249 DUX4L17-201ENST00000557360 1267 ntBASIC12.97□□□□□ -0.33
HOXD3P31249 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXD3P31249 AC091167.2-201ENST00000579581 588 ntBASIC12.97□□□□□ -0.33
HOXD3P31249 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC12.97□□□□□ -0.33
HOXD3P31249 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
HOXD3P31249 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXD3P31249 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC12.97□□□□□ -0.33
HOXD3P31249 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC12.97□□□□□ -0.33
HOXD3P31249 AL353732.1-201ENST00000569618 1459 ntBASIC12.97□□□□□ -0.33
HOXD3P31249 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
HOXD3P31249 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
HOXD3P31249 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC12.96□□□□□ -0.33
HOXD3P31249 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC12.96□□□□□ -0.33
HOXD3P31249 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 TIMM8BP1-201ENST00000452384 211 ntBASIC12.96□□□□□ -0.33
HOXD3P31249 LHX6-205ENST00000464484 666 ntTSL 2 BASIC12.96□□□□□ -0.33
HOXD3P31249 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
HOXD3P31249 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC12.96□□□□□ -0.33
HOXD3P31249 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC12.96□□□□□ -0.33
HOXD3P31249 AL513210.1-201ENST00000629608 234 ntBASIC12.96□□□□□ -0.33
HOXD3P31249 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC12.96□□□□□ -0.33
HOXD3P31249 AC105339.1-204ENST00000636249 355 ntBASIC12.96□□□□□ -0.33
HOXD3P31249 AL645728.2-201ENST00000641974 660 ntBASIC12.96□□□□□ -0.33
HOXD3P31249 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC12.96□□□□□ -0.33
HOXD3P31249 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC12.96□□□□□ -0.33
HOXD3P31249 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
HOXD3P31249 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HOXD3P31249 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.34
HOXD3P31249 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
HOXD3P31249 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC12.96□□□□□ -0.34
HOXD3P31249 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HOXD3P31249 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
HOXD3P31249 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
HOXD3P31249 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
HOXD3P31249 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HOXD3P31249 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
HOXD3P31249 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC12.96□□□□□ -0.34
HOXD3P31249 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
HOXD3P31249 AP001094.4-201ENST00000579008 2176 ntBASIC12.96□□□□□ -0.34
HOXD3P31249 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms