Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.6□□□□□ -0.07
COL8A1P27658 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
COL8A1P27658 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14.6□□□□□ -0.07
COL8A1P27658 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
COL8A1P27658 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
COL8A1P27658 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC14.6□□□□□ -0.07
COL8A1P27658 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 AC004790.1-201ENST00000612686 536 ntBASIC14.6□□□□□ -0.07
COL8A1P27658 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
COL8A1P27658 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.6□□□□□ -0.07
COL8A1P27658 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.6□□□□□ -0.07
COL8A1P27658 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC14.6□□□□□ -0.07
COL8A1P27658 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
COL8A1P27658 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 NFIC-211ENST00000641145 8399 ntBASIC14.6□□□□□ -0.07
COL8A1P27658 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC14.59□□□□□ -0.07
COL8A1P27658 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
COL8A1P27658 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
COL8A1P27658 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC14.59□□□□□ -0.07
COL8A1P27658 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL8A1P27658 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
COL8A1P27658 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC14.59□□□□□ -0.07
COL8A1P27658 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC14.59□□□□□ -0.07
COL8A1P27658 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC14.59□□□□□ -0.07
COL8A1P27658 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
COL8A1P27658 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC14.59□□□□□ -0.07
COL8A1P27658 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 ENSA-206ENST00000361631 725 ntTSL 2 BASIC14.59□□□□□ -0.07
COL8A1P27658 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.59□□□□□ -0.07
COL8A1P27658 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.59□□□□□ -0.07
COL8A1P27658 AP005482.1-201ENST00000563722 1273 ntBASIC14.59□□□□□ -0.07
COL8A1P27658 AC005412.3-201ENST00000580309 715 ntBASIC14.59□□□□□ -0.07
COL8A1P27658 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.59□□□□□ -0.07
COL8A1P27658 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.59□□□□□ -0.07
COL8A1P27658 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC14.59□□□□□ -0.07
COL8A1P27658 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
COL8A1P27658 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC14.59□□□□□ -0.07
COL8A1P27658 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC14.59□□□□□ -0.07
COL8A1P27658 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL8A1P27658 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL8A1P27658 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL8A1P27658 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL8A1P27658 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.58□□□□□ -0.07
COL8A1P27658 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 OR6D1P-203ENST00000641209 4860 ntBASIC14.58□□□□□ -0.08
COL8A1P27658 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 AMT-250ENST00000637682 1823 ntTSL 5 BASIC14.58□□□□□ -0.08
COL8A1P27658 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.58□□□□□ -0.08
COL8A1P27658 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.58□□□□□ -0.08
COL8A1P27658 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL8A1P27658 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.58□□□□□ -0.08
COL8A1P27658 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
COL8A1P27658 ACTBP11-201ENST00000436287 1126 ntBASIC14.58□□□□□ -0.08
COL8A1P27658 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms