Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.1■□□□□ 0.33
COL9A1P20849 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.1■□□□□ 0.33
COL9A1P20849 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.1■□□□□ 0.33
COL9A1P20849 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
COL9A1P20849 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.1■□□□□ 0.33
COL9A1P20849 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
COL9A1P20849 AC005412.3-201ENST00000580309 715 ntBASIC17.1■□□□□ 0.33
COL9A1P20849 RN7SL718P-201ENST00000581254 303 ntBASIC17.1■□□□□ 0.33
COL9A1P20849 AC008267.7-201ENST00000624570 1194 ntBASIC17.1■□□□□ 0.33
COL9A1P20849 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.1■□□□□ 0.33
COL9A1P20849 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
COL9A1P20849 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
COL9A1P20849 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.1■□□□□ 0.33
COL9A1P20849 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
COL9A1P20849 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.09■□□□□ 0.33
COL9A1P20849 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.09■□□□□ 0.33
COL9A1P20849 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
COL9A1P20849 MIR346-201ENST00000362234 95 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL9A1P20849 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.09■□□□□ 0.33
COL9A1P20849 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC17.09■□□□□ 0.33
COL9A1P20849 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
COL9A1P20849 CSF2RBP1-201ENST00000447905 391 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 AC104306.2-201ENST00000451877 341 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 UPF3AP2-201ENST00000457924 1132 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 RERG-205ENST00000537647 935 ntTSL 2 BASIC17.09■□□□□ 0.33
COL9A1P20849 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.09■□□□□ 0.33
COL9A1P20849 USP3-AS1-204ENST00000559861 620 ntTSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 DERL2-202ENST00000570848 657 ntTSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 CTBP2P3-201ENST00000585629 1255 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 BTNL10-201ENST00000595971 695 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 AL009183.1-201ENST00000603760 355 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 TEX28P1-201ENST00000613479 1221 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 TEX28P2-201ENST00000617764 1221 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 SLC7A15P-201ENST00000424028 1363 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 AC012569.1-201ENST00000591191 1524 ntBASIC17.09■□□□□ 0.33
COL9A1P20849 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.09■□□□□ 0.33
COL9A1P20849 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
COL9A1P20849 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL9A1P20849 AC020763.4-201ENST00000623414 4170 ntBASIC17.08■□□□□ 0.33
COL9A1P20849 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.08■□□□□ 0.33
COL9A1P20849 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.08■□□□□ 0.33
COL9A1P20849 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL9A1P20849 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.08■□□□□ 0.33
COL9A1P20849 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL9A1P20849 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.08■□□□□ 0.33
COL9A1P20849 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL9A1P20849 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
COL9A1P20849 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
COL9A1P20849 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
COL9A1P20849 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
COL9A1P20849 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.08■□□□□ 0.32
COL9A1P20849 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
COL9A1P20849 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.08■□□□□ 0.32
COL9A1P20849 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL9A1P20849 PDIA3P1-201ENST00000471856 1510 ntBASIC17.08■□□□□ 0.32
COL9A1P20849 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL9A1P20849 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL9A1P20849 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
COL9A1P20849 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL9A1P20849 SERF2-206ENST00000409291 807 ntTSL 3 BASIC17.08■□□□□ 0.32
COL9A1P20849 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms