Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
LDB3O75112 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 HMGA1P7-201ENST00000406908 502 ntBASIC15.77■□□□□ 0.12
LDB3O75112 CDK2AP2P3-201ENST00000422476 372 ntBASIC15.77■□□□□ 0.12
LDB3O75112 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.77■□□□□ 0.12
LDB3O75112 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.77■□□□□ 0.12
LDB3O75112 PGAM5P1-201ENST00000518923 814 ntBASIC15.77■□□□□ 0.12
LDB3O75112 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.77■□□□□ 0.12
LDB3O75112 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.77■□□□□ 0.12
LDB3O75112 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.77■□□□□ 0.12
LDB3O75112 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
LDB3O75112 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.77■□□□□ 0.12
LDB3O75112 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC15.77■□□□□ 0.12
LDB3O75112 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.77■□□□□ 0.12
LDB3O75112 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.77■□□□□ 0.12
LDB3O75112 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
LDB3O75112 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LDB3O75112 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LDB3O75112 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.11
LDB3O75112 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
LDB3O75112 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LDB3O75112 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
LDB3O75112 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LDB3O75112 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LDB3O75112 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
LDB3O75112 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
LDB3O75112 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.77■□□□□ 0.11
LDB3O75112 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
LDB3O75112 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 PMS2P7-201ENST00000506558 1336 ntBASIC15.76■□□□□ 0.11
LDB3O75112 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.76■□□□□ 0.11
LDB3O75112 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.76■□□□□ 0.11
LDB3O75112 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.76■□□□□ 0.11
LDB3O75112 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.76■□□□□ 0.11
LDB3O75112 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.76■□□□□ 0.11
LDB3O75112 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.76■□□□□ 0.11
LDB3O75112 AL031432.2-201ENST00000566714 459 ntBASIC15.76■□□□□ 0.11
LDB3O75112 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 AL928711.1-201ENST00000570165 459 ntBASIC15.76■□□□□ 0.11
LDB3O75112 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.76■□□□□ 0.11
LDB3O75112 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.76■□□□□ 0.11
LDB3O75112 AL645728.2-201ENST00000641974 660 ntBASIC15.76■□□□□ 0.11
LDB3O75112 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 SNX33P1-201ENST00000592116 1762 ntBASIC15.76■□□□□ 0.11
LDB3O75112 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.76■□□□□ 0.11
LDB3O75112 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
LDB3O75112 HLA-A-202ENST00000376806 1854 ntBASIC15.76■□□□□ 0.11
LDB3O75112 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
LDB3O75112 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.76■□□□□ 0.11
LDB3O75112 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
LDB3O75112 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.75■□□□□ 0.11
LDB3O75112 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
LDB3O75112 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.75■□□□□ 0.11
LDB3O75112 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
LDB3O75112 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.75■□□□□ 0.11
LDB3O75112 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.75■□□□□ 0.11
LDB3O75112 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
LDB3O75112 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.75■□□□□ 0.11
LDB3O75112 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
LDB3O75112 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms