Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
NPIPA2E9PIF3 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
NPIPA2E9PIF3 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.29■□□□□ 0.04
NPIPA2E9PIF3 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 AC107918.2-201ENST00000530817 355 ntBASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 AC124947.2-201ENST00000547118 1133 ntBASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 AC004835.2-201ENST00000603762 682 ntBASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 AC027612.4-201ENST00000605371 583 ntBASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
NPIPA2E9PIF3 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 AC002056.1-201ENST00000395613 760 ntBASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 AC105339.1-204ENST00000636249 355 ntBASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 AL645728.2-201ENST00000641974 660 ntBASIC15.27■□□□□ 0.04
NPIPA2E9PIF3 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
NPIPA2E9PIF3 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms