Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 GCSHP2-201ENST00000560971 527 ntBASIC16.32■□□□□ 0.2
NDE1Q9NXR1 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 AC007326.2-201ENST00000624224 7579 ntBASIC16.32■□□□□ 0.2
NDE1Q9NXR1 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
NDE1Q9NXR1 AC073347.1-201ENST00000421633 2643 ntBASIC16.32■□□□□ 0.2
NDE1Q9NXR1 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 LINC00895-201ENST00000629028 1637 ntBASIC16.31■□□□□ 0.2
NDE1Q9NXR1 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 AC007967.3-201ENST00000434308 558 ntBASIC16.31■□□□□ 0.2
NDE1Q9NXR1 HLA-F-220ENST00000434407 884 ntBASIC16.31■□□□□ 0.2
NDE1Q9NXR1 FAM201B-201ENST00000458407 597 ntBASIC16.31■□□□□ 0.2
NDE1Q9NXR1 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 MIR4651-201ENST00000582622 73 ntBASIC16.31■□□□□ 0.2
NDE1Q9NXR1 AC092666.2-201ENST00000613287 246 ntBASIC16.31■□□□□ 0.2
NDE1Q9NXR1 AC079602.3-201ENST00000623931 403 ntBASIC16.31■□□□□ 0.2
NDE1Q9NXR1 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 TNRC18P2-201ENST00000417666 2714 ntBASIC16.31■□□□□ 0.2
NDE1Q9NXR1 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
NDE1Q9NXR1 AC022532.1-201ENST00000624563 1728 ntBASIC16.31■□□□□ 0.2
NDE1Q9NXR1 AC006058.4-201ENST00000624016 1670 ntBASIC16.3■□□□□ 0.2
NDE1Q9NXR1 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.3■□□□□ 0.2
NDE1Q9NXR1 GPR32P1-201ENST00000601788 811 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms