Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TRIM56Q9BRZ2 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
TRIM56Q9BRZ2 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 AL590787.1-201ENST00000568856 1315 ntBASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.17■□□□□ 0.34
TRIM56Q9BRZ2 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 AP002414.1-201ENST00000391405 1147 ntBASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.16■□□□□ 0.34
TRIM56Q9BRZ2 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms