Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 SPDYE9P-201ENST00000570642 692 ntBASIC19.62■□□□□ 0.73
NUP88Q99567 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 SPDYE10P-202ENST00000612005 668 ntBASIC19.62■□□□□ 0.73
NUP88Q99567 SPDYE8P-202ENST00000612377 668 ntBASIC19.62■□□□□ 0.73
NUP88Q99567 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NUP88Q99567 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NUP88Q99567 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
NUP88Q99567 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
NUP88Q99567 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.62■□□□□ 0.73
NUP88Q99567 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NUP88Q99567 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NUP88Q99567 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.61■□□□□ 0.73
NUP88Q99567 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
NUP88Q99567 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.61■□□□□ 0.73
NUP88Q99567 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
NUP88Q99567 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 TFAMP1-201ENST00000412727 736 ntBASIC19.61■□□□□ 0.73
NUP88Q99567 AC023141.5-201ENST00000458585 616 ntBASIC19.61■□□□□ 0.73
NUP88Q99567 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.61■□□□□ 0.73
NUP88Q99567 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NUP88Q99567 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.61■□□□□ 0.73
NUP88Q99567 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.61■□□□□ 0.73
NUP88Q99567 AC243562.1-201ENST00000560672 389 ntBASIC19.61■□□□□ 0.73
NUP88Q99567 AL135744.1-201ENST00000565098 629 ntBASIC19.61■□□□□ 0.73
NUP88Q99567 AL009183.1-201ENST00000603760 355 ntBASIC19.61■□□□□ 0.73
NUP88Q99567 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.61■□□□□ 0.73
NUP88Q99567 AD000864.1-201ENST00000624076 2295 ntBASIC19.61■□□□□ 0.73
NUP88Q99567 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.61■□□□□ 0.73
NUP88Q99567 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.61■□□□□ 0.73
NUP88Q99567 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.61■□□□□ 0.73
NUP88Q99567 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NUP88Q99567 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NUP88Q99567 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
NUP88Q99567 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
NUP88Q99567 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
NUP88Q99567 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
NUP88Q99567 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
NUP88Q99567 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.6■□□□□ 0.73
NUP88Q99567 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
NUP88Q99567 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
NUP88Q99567 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
NUP88Q99567 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
NUP88Q99567 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.6■□□□□ 0.73
NUP88Q99567 AL627223.1-201ENST00000416693 442 ntBASIC19.6■□□□□ 0.73
NUP88Q99567 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.6■□□□□ 0.73
NUP88Q99567 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC19.6■□□□□ 0.73
NUP88Q99567 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.6■□□□□ 0.73
NUP88Q99567 AC004449.1-201ENST00000564240 433 ntBASIC19.6■□□□□ 0.73
NUP88Q99567 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.6■□□□□ 0.73
NUP88Q99567 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.6■□□□□ 0.73
NUP88Q99567 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.6■□□□□ 0.73
NUP88Q99567 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 AP001094.4-201ENST00000579008 2176 ntBASIC19.6■□□□□ 0.73
NUP88Q99567 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.6■□□□□ 0.73
NUP88Q99567 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
NUP88Q99567 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NUP88Q99567 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NUP88Q99567 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.59■□□□□ 0.73
NUP88Q99567 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
NUP88Q99567 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NUP88Q99567 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NUP88Q99567 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.59■□□□□ 0.73
NUP88Q99567 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
NUP88Q99567 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
NUP88Q99567 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
NUP88Q99567 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NUP88Q99567 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC19.59■□□□□ 0.73
NUP88Q99567 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.59■□□□□ 0.73
NUP88Q99567 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.59■□□□□ 0.73
NUP88Q99567 RARRES2P8-201ENST00000566335 367 ntBASIC19.59■□□□□ 0.73
NUP88Q99567 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NUP88Q99567 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms