Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
RTF1Q92541 AC008267.7-201ENST00000624570 1194 ntBASIC21.84■■□□□ 1.09
RTF1Q92541 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RTF1Q92541 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
RTF1Q92541 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RTF1Q92541 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTF1Q92541 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
RTF1Q92541 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
RTF1Q92541 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTF1Q92541 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
RTF1Q92541 AL671710.1-201ENST00000610245 2349 ntBASIC21.84■■□□□ 1.09
RTF1Q92541 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTF1Q92541 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC21.84■■□□□ 1.09
RTF1Q92541 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTF1Q92541 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC21.84■■□□□ 1.09
RTF1Q92541 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RTF1Q92541 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RTF1Q92541 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTF1Q92541 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTF1Q92541 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
RTF1Q92541 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RTF1Q92541 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
RTF1Q92541 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.83■■□□□ 1.09
RTF1Q92541 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC21.83■■□□□ 1.09
RTF1Q92541 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.83■■□□□ 1.09
RTF1Q92541 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.83■■□□□ 1.09
RTF1Q92541 AP002490.2-201ENST00000524791 560 ntBASIC21.83■■□□□ 1.09
RTF1Q92541 AC027307.2-201ENST00000591252 911 ntBASIC21.83■■□□□ 1.09
RTF1Q92541 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RTF1Q92541 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RTF1Q92541 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
RTF1Q92541 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC21.83■■□□□ 1.08
RTF1Q92541 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.83■■□□□ 1.08
RTF1Q92541 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RTF1Q92541 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RTF1Q92541 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
RTF1Q92541 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
RTF1Q92541 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC21.82■■□□□ 1.08
RTF1Q92541 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RTF1Q92541 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RTF1Q92541 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RTF1Q92541 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC21.82■■□□□ 1.08
RTF1Q92541 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RTF1Q92541 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RTF1Q92541 KRT18P34-201ENST00000488218 1270 ntBASIC21.82■■□□□ 1.08
RTF1Q92541 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RTF1Q92541 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
RTF1Q92541 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RTF1Q92541 OR6D1P-203ENST00000641209 4860 ntBASIC21.81■■□□□ 1.08
RTF1Q92541 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
RTF1Q92541 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
RTF1Q92541 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC21.81■■□□□ 1.08
RTF1Q92541 RBPMS2P1-201ENST00000437762 623 ntBASIC21.81■■□□□ 1.08
RTF1Q92541 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RTF1Q92541 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC21.81■■□□□ 1.08
RTF1Q92541 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC21.81■■□□□ 1.08
RTF1Q92541 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC21.81■■□□□ 1.08
RTF1Q92541 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.81■■□□□ 1.08
RTF1Q92541 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC21.81■■□□□ 1.08
RTF1Q92541 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 AL391256.1-201ENST00000443260 1855 ntBASIC21.81■■□□□ 1.08
RTF1Q92541 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RTF1Q92541 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC21.81■■□□□ 1.08
RTF1Q92541 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC21.8■■□□□ 1.08
RTF1Q92541 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
RTF1Q92541 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
RTF1Q92541 EML3-212ENST00000494176 2901 ntTSL 2 BASIC21.8■■□□□ 1.08
RTF1Q92541 EML3-216ENST00000529309 2909 ntTSL 2 BASIC21.8■■□□□ 1.08
RTF1Q92541 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
RTF1Q92541 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
RTF1Q92541 NARF-206ENST00000457415 1668 ntTSL 5 BASIC21.8■■□□□ 1.08
RTF1Q92541 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 PTMS-202ENST00000389462 773 ntTSL 2 BASIC21.8■■□□□ 1.08
RTF1Q92541 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC21.8■■□□□ 1.08
RTF1Q92541 RPL30-202ENST00000396070 440 ntTSL 2 BASIC21.8■■□□□ 1.08
RTF1Q92541 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
RTF1Q92541 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.8■■□□□ 1.08
RTF1Q92541 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RTF1Q92541 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
RTF1Q92541 AC084121.4-201ENST00000641598 221 ntBASIC21.8■■□□□ 1.08
RTF1Q92541 AF228730.8-201ENST00000642140 221 ntBASIC21.8■■□□□ 1.08
RTF1Q92541 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms