Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE4Q8N205 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE4Q8N205 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE4Q8N205 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
SYNE4Q8N205 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC20.73■□□□□ 0.91
SYNE4Q8N205 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 GOLGA2P9-201ENST00000596977 1937 ntBASIC20.72■□□□□ 0.91
SYNE4Q8N205 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 RN7SL692P-201ENST00000464677 288 ntBASIC20.72■□□□□ 0.91
SYNE4Q8N205 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 AC007967.4-201ENST00000614700 386 ntBASIC20.72■□□□□ 0.91
SYNE4Q8N205 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 TUBB8P12-201ENST00000308911 1335 ntBASIC20.72■□□□□ 0.91
SYNE4Q8N205 TUBB7P-202ENST00000428444 1305 ntBASIC20.72■□□□□ 0.91
SYNE4Q8N205 TUBB8P7-204ENST00000567960 1332 ntBASIC20.72■□□□□ 0.91
SYNE4Q8N205 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SYNE4Q8N205 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SYNE4Q8N205 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 COX5BP8-201ENST00000416911 349 ntBASIC20.71■□□□□ 0.91
SYNE4Q8N205 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 SPTSSB-204ENST00000617024 1292 ntBASIC20.71■□□□□ 0.91
SYNE4Q8N205 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SYNE4Q8N205 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SYNE4Q8N205 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 HLA-V-201ENST00000429037 534 ntBASIC20.7■□□□□ 0.9
SYNE4Q8N205 WDR53-204ENST00000433160 887 ntTSL 5 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 MPI-209ENST00000564003 1195 ntTSL 2 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 AC009118.2-201ENST00000613275 655 ntBASIC20.7■□□□□ 0.9
SYNE4Q8N205 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SYNE4Q8N205 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SYNE4Q8N205 AL512652.2-201ENST00000625156 1716 ntBASIC20.7■□□□□ 0.9
SYNE4Q8N205 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms