Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
PRKDCP78527 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC11.9□□□□□ -0.51
PRKDCP78527 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
PRKDCP78527 DEK-201ENST00000244776 1441 ntTSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC11.89□□□□□ -0.51
PRKDCP78527 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 NME4-207ENST00000450036 985 ntTSL 3 BASIC11.89□□□□□ -0.51
PRKDCP78527 Z93015.1-201ENST00000451718 390 ntBASIC11.89□□□□□ -0.51
PRKDCP78527 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC11.89□□□□□ -0.51
PRKDCP78527 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC11.89□□□□□ -0.51
PRKDCP78527 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
PRKDCP78527 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 HARS-202ENST00000415192 1401 ntTSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 HNRNPA1P32-201ENST00000396326 963 ntBASIC11.89□□□□□ -0.51
PRKDCP78527 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
PRKDCP78527 FTLP1-201ENST00000449155 526 ntBASIC11.89□□□□□ -0.51
PRKDCP78527 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
PRKDCP78527 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC11.89□□□□□ -0.51
PRKDCP78527 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC11.89□□□□□ -0.51
PRKDCP78527 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC11.89□□□□□ -0.51
PRKDCP78527 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC11.89□□□□□ -0.51
PRKDCP78527 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
PRKDCP78527 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
PRKDCP78527 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
PRKDCP78527 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC11.89□□□□□ -0.51
PRKDCP78527 AL671710.1-201ENST00000610245 2349 ntBASIC11.89□□□□□ -0.51
PRKDCP78527 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC11.89□□□□□ -0.51
PRKDCP78527 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC11.88□□□□□ -0.51
PRKDCP78527 NAA38-207ENST00000576861 556 ntTSL 3 BASIC11.88□□□□□ -0.51
PRKDCP78527 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC11.88□□□□□ -0.51
PRKDCP78527 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 AC116562.4-201ENST00000641316 2276 ntBASIC11.88□□□□□ -0.51
PRKDCP78527 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC11.88□□□□□ -0.51
PRKDCP78527 LYSMD4-203ENST00000378904 2122 ntBASIC11.88□□□□□ -0.51
PRKDCP78527 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 MTX1P1-201ENST00000440904 838 ntBASIC11.88□□□□□ -0.51
PRKDCP78527 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 AC079316.1-201ENST00000548397 411 ntBASIC11.88□□□□□ -0.51
PRKDCP78527 AC018635.2-201ENST00000608625 364 ntBASIC11.88□□□□□ -0.51
PRKDCP78527 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
PRKDCP78527 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC11.88□□□□□ -0.51
PRKDCP78527 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC11.88□□□□□ -0.51
PRKDCP78527 AL442647.2-201ENST00000429864 857 ntBASIC11.88□□□□□ -0.51
PRKDCP78527 ACTG1P3-201ENST00000431775 1114 ntBASIC11.88□□□□□ -0.51
PRKDCP78527 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC11.88□□□□□ -0.51
PRKDCP78527 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC11.88□□□□□ -0.51
PRKDCP78527 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC11.88□□□□□ -0.51
PRKDCP78527 CLUHP6-201ENST00000580789 941 ntBASIC11.88□□□□□ -0.51
PRKDCP78527 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC11.88□□□□□ -0.51
PRKDCP78527 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
PRKDCP78527 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
PRKDCP78527 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
PRKDCP78527 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
PRKDCP78527 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC11.88□□□□□ -0.51
PRKDCP78527 FNTAP2-201ENST00000430308 634 ntBASIC11.88□□□□□ -0.51
PRKDCP78527 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC11.88□□□□□ -0.51
PRKDCP78527 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC11.88□□□□□ -0.51
PRKDCP78527 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
PRKDCP78527 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC11.88□□□□□ -0.51
PRKDCP78527 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
PRKDCP78527 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
PRKDCP78527 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC11.87□□□□□ -0.51
PRKDCP78527 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC11.87□□□□□ -0.51
PRKDCP78527 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC11.87□□□□□ -0.51
PRKDCP78527 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms