Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.54■□□□□ 0.08
RNF4P78317 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RNF4P78317 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.53■□□□□ 0.08
RNF4P78317 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 AL645728.1-201ENST00000366221 2101 ntBASIC15.53■□□□□ 0.08
RNF4P78317 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
RNF4P78317 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.53■□□□□ 0.08
RNF4P78317 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.53■□□□□ 0.08
RNF4P78317 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 AC005915.1-201ENST00000624912 2018 ntBASIC15.53■□□□□ 0.08
RNF4P78317 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
RNF4P78317 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
RNF4P78317 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 AL391256.1-201ENST00000443260 1855 ntBASIC15.53■□□□□ 0.08
RNF4P78317 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
RNF4P78317 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
RNF4P78317 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC15.53■□□□□ 0.08
RNF4P78317 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
RNF4P78317 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.53■□□□□ 0.08
RNF4P78317 RNU1-129P-201ENST00000384064 167 ntBASIC15.53■□□□□ 0.08
RNF4P78317 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.53■□□□□ 0.08
RNF4P78317 ACTG1P14-201ENST00000446382 1122 ntBASIC15.53■□□□□ 0.08
RNF4P78317 YBX1P5-201ENST00000509441 847 ntBASIC15.53■□□□□ 0.08
RNF4P78317 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.53■□□□□ 0.08
RNF4P78317 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.53■□□□□ 0.08
RNF4P78317 U1.21-201ENST00000580816 167 ntBASIC15.53■□□□□ 0.08
RNF4P78317 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 AL009183.1-201ENST00000603760 355 ntBASIC15.53■□□□□ 0.08
RNF4P78317 AC006538.3-201ENST00000612495 578 ntBASIC15.53■□□□□ 0.08
RNF4P78317 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 AC105020.1-201ENST00000435356 2205 ntBASIC15.53■□□□□ 0.08
RNF4P78317 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
RNF4P78317 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.53■□□□□ 0.08
RNF4P78317 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 OR6D1P-203ENST00000641209 4860 ntBASIC15.53■□□□□ 0.08
RNF4P78317 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
RNF4P78317 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.53■□□□□ 0.08
RNF4P78317 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.52■□□□□ 0.08
RNF4P78317 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.52■□□□□ 0.08
RNF4P78317 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
RNF4P78317 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.52■□□□□ 0.08
RNF4P78317 AL391005.1-201ENST00000623953 2435 ntBASIC15.52■□□□□ 0.08
RNF4P78317 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.52■□□□□ 0.08
RNF4P78317 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
RNF4P78317 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RNF4P78317 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
RNF4P78317 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.52■□□□□ 0.08
RNF4P78317 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
RNF4P78317 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.08
RNF4P78317 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.52■□□□□ 0.08
RNF4P78317 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.52■□□□□ 0.08
RNF4P78317 MIR4469-201ENST00000583919 79 ntBASIC15.52■□□□□ 0.08
RNF4P78317 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.52■□□□□ 0.08
RNF4P78317 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.52■□□□□ 0.08
RNF4P78317 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.52■□□□□ 0.08
RNF4P78317 AL031055.1-201ENST00000606362 631 ntBASIC15.52■□□□□ 0.08
RNF4P78317 GPALPP1-207ENST00000611650 899 ntBASIC15.52■□□□□ 0.08
RNF4P78317 AC139530.3-201ENST00000620344 690 ntBASIC15.52■□□□□ 0.08
RNF4P78317 AC055717.3-201ENST00000622967 595 ntBASIC15.52■□□□□ 0.08
RNF4P78317 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.52■□□□□ 0.08
RNF4P78317 AC092902.6-201ENST00000641783 218 ntBASIC15.52■□□□□ 0.08
RNF4P78317 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
RNF4P78317 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNF4P78317 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
RNF4P78317 ELL2P1-201ENST00000413990 1906 ntBASIC15.52■□□□□ 0.07
RNF4P78317 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.52■□□□□ 0.07
RNF4P78317 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC15.52■□□□□ 0.07
RNF4P78317 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
RNF4P78317 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNF4P78317 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNF4P78317 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNF4P78317 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
RNF4P78317 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
RNF4P78317 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.52■□□□□ 0.07
RNF4P78317 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RNF4P78317 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.51■□□□□ 0.07
RNF4P78317 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.51■□□□□ 0.07
RNF4P78317 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms