Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.56■□□□□ 0.24
CXCL12P48061 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 RN7SL837P-201ENST00000463010 287 ntBASIC16.56■□□□□ 0.24
CXCL12P48061 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.56■□□□□ 0.24
CXCL12P48061 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.56■□□□□ 0.24
CXCL12P48061 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.56■□□□□ 0.24
CXCL12P48061 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.56■□□□□ 0.24
CXCL12P48061 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.56■□□□□ 0.24
CXCL12P48061 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.56■□□□□ 0.24
CXCL12P48061 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.56■□□□□ 0.24
CXCL12P48061 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.56■□□□□ 0.24
CXCL12P48061 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.56■□□□□ 0.24
CXCL12P48061 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.56■□□□□ 0.24
CXCL12P48061 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.56■□□□□ 0.24
CXCL12P48061 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CXCL12P48061 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CXCL12P48061 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.55■□□□□ 0.24
CXCL12P48061 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CXCL12P48061 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
CXCL12P48061 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.55■□□□□ 0.24
CXCL12P48061 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.55■□□□□ 0.24
CXCL12P48061 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
CXCL12P48061 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.55■□□□□ 0.24
CXCL12P48061 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.55■□□□□ 0.24
CXCL12P48061 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.55■□□□□ 0.24
CXCL12P48061 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
CXCL12P48061 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.55■□□□□ 0.24
CXCL12P48061 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.55■□□□□ 0.24
CXCL12P48061 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.55■□□□□ 0.24
CXCL12P48061 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.55■□□□□ 0.24
CXCL12P48061 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CXCL12P48061 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.55■□□□□ 0.24
CXCL12P48061 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.55■□□□□ 0.24
CXCL12P48061 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.55■□□□□ 0.24
CXCL12P48061 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC16.54■□□□□ 0.24
CXCL12P48061 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.54■□□□□ 0.24
CXCL12P48061 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CXCL12P48061 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.54■□□□□ 0.24
CXCL12P48061 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CXCL12P48061 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.54■□□□□ 0.24
CXCL12P48061 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.54■□□□□ 0.24
CXCL12P48061 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CXCL12P48061 MYCLP2-201ENST00000449268 967 ntBASIC16.54■□□□□ 0.24
CXCL12P48061 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 AC092658.1-201ENST00000505836 891 ntBASIC16.54■□□□□ 0.24
CXCL12P48061 TPRX2P-201ENST00000535362 881 ntBASIC16.54■□□□□ 0.24
CXCL12P48061 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.54■□□□□ 0.24
CXCL12P48061 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.54■□□□□ 0.24
CXCL12P48061 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.54■□□□□ 0.24
CXCL12P48061 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.54■□□□□ 0.24
CXCL12P48061 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.54■□□□□ 0.24
CXCL12P48061 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.54■□□□□ 0.24
CXCL12P48061 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CXCL12P48061 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 SRD5A3P1-201ENST00000603021 949 ntBASIC16.54■□□□□ 0.24
CXCL12P48061 AC004790.1-201ENST00000612686 536 ntBASIC16.54■□□□□ 0.24
CXCL12P48061 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.54■□□□□ 0.24
CXCL12P48061 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CXCL12P48061 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms