Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC005412.3-201ENST00000580309 715 ntBASIC16.73■□□□□ 0.27
MSH3P20585 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH3P20585 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.73■□□□□ 0.27
MSH3P20585 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.73■□□□□ 0.27
MSH3P20585 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 AC005915.1-201ENST00000624912 2018 ntBASIC16.73■□□□□ 0.27
MSH3P20585 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH3P20585 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
MSH3P20585 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.73■□□□□ 0.27
MSH3P20585 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.73■□□□□ 0.27
MSH3P20585 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
MSH3P20585 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
MSH3P20585 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.72■□□□□ 0.27
MSH3P20585 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 PCDHB17P-201ENST00000539533 2393 ntBASIC16.72■□□□□ 0.27
MSH3P20585 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
MSH3P20585 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.72■□□□□ 0.27
MSH3P20585 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.72■□□□□ 0.27
MSH3P20585 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
MSH3P20585 KRT18P3-201ENST00000451602 1288 ntBASIC16.72■□□□□ 0.27
MSH3P20585 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.72■□□□□ 0.27
MSH3P20585 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.72■□□□□ 0.27
MSH3P20585 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.72■□□□□ 0.27
MSH3P20585 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.72■□□□□ 0.27
MSH3P20585 KRT18P58-201ENST00000527480 1120 ntBASIC16.72■□□□□ 0.27
MSH3P20585 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
MSH3P20585 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.72■□□□□ 0.27
MSH3P20585 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.72■□□□□ 0.27
MSH3P20585 FAM197Y3-203ENST00000618346 717 ntBASIC16.72■□□□□ 0.27
MSH3P20585 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
MSH3P20585 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.72■□□□□ 0.27
MSH3P20585 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
MSH3P20585 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.72■□□□□ 0.27
MSH3P20585 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 AL353732.1-201ENST00000569618 1459 ntBASIC16.72■□□□□ 0.27
MSH3P20585 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
MSH3P20585 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.72■□□□□ 0.27
MSH3P20585 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
MSH3P20585 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
MSH3P20585 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.71■□□□□ 0.27
MSH3P20585 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.71■□□□□ 0.27
MSH3P20585 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.71■□□□□ 0.27
MSH3P20585 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.71■□□□□ 0.27
MSH3P20585 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.71■□□□□ 0.27
MSH3P20585 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
MSH3P20585 IGLL3P-201ENST00000412472 434 ntBASIC16.71■□□□□ 0.27
MSH3P20585 AL513480.1-201ENST00000451731 511 ntBASIC16.71■□□□□ 0.27
MSH3P20585 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
MSH3P20585 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
MSH3P20585 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
MSH3P20585 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.71■□□□□ 0.27
MSH3P20585 AC096734.2-201ENST00000562054 433 ntBASIC16.71■□□□□ 0.27
MSH3P20585 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.71■□□□□ 0.27
MSH3P20585 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.71■□□□□ 0.27
MSH3P20585 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
MSH3P20585 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.71■□□□□ 0.27
MSH3P20585 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
MSH3P20585 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms