Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.58■□□□□ 0.56
TPM1P09493 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TPM1P09493 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 AC132872.4-202ENST00000622924 2756 ntBASIC18.57■□□□□ 0.56
TPM1P09493 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.57■□□□□ 0.56
TPM1P09493 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC18.57■□□□□ 0.56
TPM1P09493 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
TPM1P09493 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.57■□□□□ 0.56
TPM1P09493 AC246785.2-201ENST00000432512 513 ntBASIC18.57■□□□□ 0.56
TPM1P09493 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 HLA-J-202ENST00000469281 1241 ntBASIC18.57■□□□□ 0.56
TPM1P09493 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.57■□□□□ 0.56
TPM1P09493 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.57■□□□□ 0.56
TPM1P09493 AC073592.5-201ENST00000624854 528 ntBASIC18.57■□□□□ 0.56
TPM1P09493 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.57■□□□□ 0.56
TPM1P09493 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 AC132938.5-201ENST00000624980 1813 ntBASIC18.57■□□□□ 0.56
TPM1P09493 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
TPM1P09493 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 AC073508.3-201ENST00000619697 1419 ntBASIC18.57■□□□□ 0.56
TPM1P09493 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
TPM1P09493 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.57■□□□□ 0.56
TPM1P09493 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TPM1P09493 AC092850.2-201ENST00000623821 2697 ntBASIC18.57■□□□□ 0.56
TPM1P09493 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
TPM1P09493 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.56■□□□□ 0.56
TPM1P09493 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.56■□□□□ 0.56
TPM1P09493 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC18.56■□□□□ 0.56
TPM1P09493 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
TPM1P09493 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC18.56■□□□□ 0.56
TPM1P09493 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.56■□□□□ 0.56
TPM1P09493 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.56■□□□□ 0.56
TPM1P09493 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TPM1P09493 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 AC005521.1-201ENST00000393351 872 ntBASIC18.56■□□□□ 0.56
TPM1P09493 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.56■□□□□ 0.56
TPM1P09493 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.56■□□□□ 0.56
TPM1P09493 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
TPM1P09493 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.56■□□□□ 0.56
TPM1P09493 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TPM1P09493 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TPM1P09493 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.56■□□□□ 0.56
TPM1P09493 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TPM1P09493 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
TPM1P09493 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.56■□□□□ 0.56
TPM1P09493 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC18.55■□□□□ 0.56
TPM1P09493 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TPM1P09493 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TPM1P09493 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.55■□□□□ 0.56
TPM1P09493 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.55■□□□□ 0.56
TPM1P09493 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TPM1P09493 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC18.55■□□□□ 0.56
TPM1P09493 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TPM1P09493 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TPM1P09493 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TPM1P09493 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
TPM1P09493 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TPM1P09493 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TPM1P09493 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.55■□□□□ 0.56
TPM1P09493 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.55■□□□□ 0.56
TPM1P09493 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.55■□□□□ 0.56
TPM1P09493 AC093827.2-201ENST00000512654 315 ntBASIC18.55■□□□□ 0.56
TPM1P09493 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.55■□□□□ 0.56
TPM1P09493 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TPM1P09493 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.55■□□□□ 0.56
TPM1P09493 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TPM1P09493 AC083849.1-201ENST00000615227 514 ntBASIC18.55■□□□□ 0.56
TPM1P09493 AD001527.2-201ENST00000622994 785 ntBASIC18.55■□□□□ 0.56
TPM1P09493 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms