Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX2Q9NPC8 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC18.01■□□□□ 0.47
SIX2Q9NPC8 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX2Q9NPC8 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.01■□□□□ 0.47
SIX2Q9NPC8 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
SIX2Q9NPC8 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.01■□□□□ 0.47
SIX2Q9NPC8 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.01■□□□□ 0.47
SIX2Q9NPC8 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
SIX2Q9NPC8 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SIX2Q9NPC8 LINC02199-201ENST00000506655 2702 ntBASIC18■□□□□ 0.47
SIX2Q9NPC8 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
SIX2Q9NPC8 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SIX2Q9NPC8 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18■□□□□ 0.47
SIX2Q9NPC8 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SIX2Q9NPC8 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SIX2Q9NPC8 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
SIX2Q9NPC8 RPS2P28-201ENST00000314255 741 ntBASIC18■□□□□ 0.47
SIX2Q9NPC8 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX2Q9NPC8 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18■□□□□ 0.47
SIX2Q9NPC8 HCG4-201ENST00000418983 998 ntBASIC18■□□□□ 0.47
SIX2Q9NPC8 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18■□□□□ 0.47
SIX2Q9NPC8 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18■□□□□ 0.47
SIX2Q9NPC8 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18■□□□□ 0.47
SIX2Q9NPC8 SLC25A6P4-201ENST00000586535 553 ntBASIC18■□□□□ 0.47
SIX2Q9NPC8 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18■□□□□ 0.47
SIX2Q9NPC8 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18■□□□□ 0.47
SIX2Q9NPC8 AC116407.3-201ENST00000623905 1129 ntBASIC18■□□□□ 0.47
SIX2Q9NPC8 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SIX2Q9NPC8 PCDHA1-201ENST00000378133 2726 ntBASIC18■□□□□ 0.47
SIX2Q9NPC8 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18■□□□□ 0.47
SIX2Q9NPC8 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18■□□□□ 0.47
SIX2Q9NPC8 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SIX2Q9NPC8 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SIX2Q9NPC8 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
SIX2Q9NPC8 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18■□□□□ 0.47
SIX2Q9NPC8 AL513523.2-202ENST00000427283 2040 ntBASIC17.99■□□□□ 0.47
SIX2Q9NPC8 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.99■□□□□ 0.47
SIX2Q9NPC8 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.99■□□□□ 0.47
SIX2Q9NPC8 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 IGLL3P-201ENST00000412472 434 ntBASIC17.98■□□□□ 0.47
SIX2Q9NPC8 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 AC108751.1-201ENST00000490852 363 ntBASIC17.98■□□□□ 0.47
SIX2Q9NPC8 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 AC010654.1-201ENST00000615722 808 ntBASIC17.98■□□□□ 0.47
SIX2Q9NPC8 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.98■□□□□ 0.47
SIX2Q9NPC8 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms